Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1444
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47810.3 68416.m05210 calcineurin-like phosphoesterase family...   138   2e-33
At3g47810.1 68416.m05209 calcineurin-like phosphoesterase family...   138   2e-33
At3g47810.2 68416.m05208 calcineurin-like phosphoesterase family...   132   3e-31
At5g54130.1 68418.m06739 calcium-binding EF hand family protein ...    30   1.3  
At1g20850.1 68414.m02612 cysteine endopeptidase, papain-type (XC...    30   1.7  
At1g18690.1 68414.m02332 galactosyl transferase GMA12/MNN10 fami...    29   2.2  
At3g43960.1 68416.m04706 cysteine proteinase, putative contains ...    29   3.0  
At1g59620.1 68414.m06705 disease resistance protein (CC-NBS clas...    29   3.9  
At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /...    28   6.8  
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    27   9.0  

>At3g47810.3 68416.m05210 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 190

 Score =  138 bits (335), Expect = 2e-33
 Identities = 55/84 (65%), Positives = 73/84 (86%)
 Frame = +2

Query: 257 NLCTKDSYDYLKTLASDVHVVRGDFDENATYPEQKVVTVGQFRIGLIHGHQVVPWGDEES 436
           NLC K+ +DYLKT+  D+H+VRG+FDE+A YPE K +T+GQF++GL HGHQV+PWGD +S
Sbjct: 40  NLCIKEIHDYLKTICPDLHIVRGEFDEDARYPENKTLTIGQFKLGLCHGHQVIPWGDLDS 99

Query: 437 LALIQRQLDVDILISGHTHRFEAY 508
           LA++QRQL VDIL++GHTH+F AY
Sbjct: 100 LAMLQRQLGVDILVTGHTHQFTAY 123



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/57 (56%), Positives = 40/57 (70%)
 Frame = +1

Query: 508 QHENKFYINPGSATGGYSPLYRDPTPSFVLMDIQSSTVVTYVYKLLGDEVKVERIEY 678
           +HE    INPGSATG YS + +D  PSFVLMDI     V YVY+L+  EVKV++IE+
Sbjct: 124 KHEGGVVINPGSATGAYSSINQDVNPSFVLMDIDGFRAVVYVYELIDGEVKVDKIEF 180



 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 25/37 (67%), Positives = 32/37 (86%)
 Frame = +3

Query: 144 MLVLVLGDLHIPHRCSSLPAKFKKLLLPGRIQHILCT 254
           +LVL LGDLH+PHR + LP KFK +L+PG+IQHI+CT
Sbjct: 2   VLVLALGDLHVPHRAADLPPKFKSMLVPGKIQHIICT 38


>At3g47810.1 68416.m05209 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 190

 Score =  138 bits (335), Expect = 2e-33
 Identities = 55/84 (65%), Positives = 73/84 (86%)
 Frame = +2

Query: 257 NLCTKDSYDYLKTLASDVHVVRGDFDENATYPEQKVVTVGQFRIGLIHGHQVVPWGDEES 436
           NLC K+ +DYLKT+  D+H+VRG+FDE+A YPE K +T+GQF++GL HGHQV+PWGD +S
Sbjct: 40  NLCIKEIHDYLKTICPDLHIVRGEFDEDARYPENKTLTIGQFKLGLCHGHQVIPWGDLDS 99

Query: 437 LALIQRQLDVDILISGHTHRFEAY 508
           LA++QRQL VDIL++GHTH+F AY
Sbjct: 100 LAMLQRQLGVDILVTGHTHQFTAY 123



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/57 (56%), Positives = 40/57 (70%)
 Frame = +1

Query: 508 QHENKFYINPGSATGGYSPLYRDPTPSFVLMDIQSSTVVTYVYKLLGDEVKVERIEY 678
           +HE    INPGSATG YS + +D  PSFVLMDI     V YVY+L+  EVKV++IE+
Sbjct: 124 KHEGGVVINPGSATGAYSSINQDVNPSFVLMDIDGFRAVVYVYELIDGEVKVDKIEF 180



 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 25/37 (67%), Positives = 32/37 (86%)
 Frame = +3

Query: 144 MLVLVLGDLHIPHRCSSLPAKFKKLLLPGRIQHILCT 254
           +LVL LGDLH+PHR + LP KFK +L+PG+IQHI+CT
Sbjct: 2   VLVLALGDLHVPHRAADLPPKFKSMLVPGKIQHIICT 38


>At3g47810.2 68416.m05208 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 180

 Score =  132 bits (318), Expect = 3e-31
 Identities = 52/81 (64%), Positives = 71/81 (87%)
 Frame = +2

Query: 266 TKDSYDYLKTLASDVHVVRGDFDENATYPEQKVVTVGQFRIGLIHGHQVVPWGDEESLAL 445
           +K+ +DYLKT+  D+H+VRG+FDE+A YPE K +T+GQF++GL HGHQV+PWGD +SLA+
Sbjct: 33  SKEIHDYLKTICPDLHIVRGEFDEDARYPENKTLTIGQFKLGLCHGHQVIPWGDLDSLAM 92

Query: 446 IQRQLDVDILISGHTHRFEAY 508
           +QRQL VDIL++GHTH+F AY
Sbjct: 93  LQRQLGVDILVTGHTHQFTAY 113



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/57 (56%), Positives = 40/57 (70%)
 Frame = +1

Query: 508 QHENKFYINPGSATGGYSPLYRDPTPSFVLMDIQSSTVVTYVYKLLGDEVKVERIEY 678
           +HE    INPGSATG YS + +D  PSFVLMDI     V YVY+L+  EVKV++IE+
Sbjct: 114 KHEGGVVINPGSATGAYSSINQDVNPSFVLMDIDGFRAVVYVYELIDGEVKVDKIEF 170


>At5g54130.1 68418.m06739 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 232

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -2

Query: 362 LSALDMSHSHQNLP*QHAHHWPKSSNNHRSLLYISFSTQYMLYPSR*KQLLELSWQAA 189
           +S+ D +H + +     AH W    N+  ++  + F   ++L P+R ++LL+ SW  A
Sbjct: 27  VSSYDTAHRYTD---SDAHKWVSHRNHRGNICAVDFI--WLLNPNRYRKLLKTSWSEA 79


>At1g20850.1 68414.m02612 cysteine endopeptidase, papain-type (XCP2)
           identical to papain-type cysteine endopeptidase XCP2
           GI:6708183 from [Arabidopsis thaliana]
          Length = 356

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 395 IHGHQVVPWGDEESL--ALIQRQLDVDILISGHTHRF 499
           I+GHQ VP  DE+SL  AL  + L V I  SG   +F
Sbjct: 246 INGHQDVPTNDEKSLLKALAHQPLSVAIDASGREFQF 282


>At1g18690.1 68414.m02332 galactosyl transferase GMA12/MNN10 family
           protein very low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 632

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 458 LDVDILISGHTHRFEAYNTRISSI-SILVQLLEVTALYTGILLLRLC*WTFRVRQ-WSP 628
           L  DIL      R+E +N  I     +L       AL TGI LLR C W+  +   W+P
Sbjct: 409 LFTDILFEIPLPRYENHNLVIHGYPDLLFNQKSWVALNTGIFLLRNCQWSLDLLDAWAP 467


>At3g43960.1 68416.m04706 cysteine proteinase, putative contains
           similarity to cysteine proteinase RD21A (thiol protease)
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 376

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 359 KVVTVGQFRIGLIHGHQVVPWGDEESLALIQRQLDVDILIS 481
           K + +   R+  I+GH+VVP  DE SL        + ++IS
Sbjct: 227 KAIEMKTTRVVTINGHEVVPVNDEMSLKKAVAYQPISVMIS 267


>At1g59620.1 68414.m06705 disease resistance protein (CC-NBS class),
           putative domain signature CC-NBS exists, suggestive of a
           disease resistance protein.
          Length = 842

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 311 AHHWPKSSNNHRSLLYISFSTQ---YMLYPSR*KQLLELSW 198
           A H P S  N + LLY++   Q   Y+  P+  K++LEL +
Sbjct: 571 ASHLPSSMQNLKMLLYLNLCVQESCYIYIPNFLKEMLELKY 611


>At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus], SEC14 cytosolic factor
           (Phosphatidylinositol/phosphatidylcholine transfer
           protein) (PI/PCTP) (SP:P24859) [Kluyveromyces lactis]
           and to SEC14 cytosolic factor (SP:P53989) [Candida
           glabrata]
          Length = 376

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = +2

Query: 305 DVHVVRGDFDENATYPEQKVVTVGQFRIGLIHGHQVVPWGDEESLALIQRQLDVDI 472
           D+H+  G  ++    P  + +      + L+HGH     GD  +L    +  D D+
Sbjct: 7   DIHISDGTMNKEEQSPNNEEMVEAFRNLLLLHGHLPDKHGDHNTLRRFLKMRDFDL 62


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 323 GDFDENATYPEQKVVTVGQFRIGLI 397
           GD+DE +TYP   VV  G+ R  ++
Sbjct: 106 GDYDEESTYPTFDVVYDGKHRYSVV 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,481,798
Number of Sequences: 28952
Number of extensions: 344009
Number of successful extensions: 964
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)