Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1443
(846 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30470| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 30 2.1
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15) 30 2.1
SB_50802| Best HMM Match : PRC (HMM E-Value=8.3) 30 2.7
SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 29 4.7
SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1) 29 4.7
SB_54034| Best HMM Match : Tctex-1 (HMM E-Value=7.5) 29 6.3
SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12) 29 6.3
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_13131| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_4008| Best HMM Match : Fer4 (HMM E-Value=0.16) 28 8.3
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0) 28 8.3
>SB_30470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 912
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +2
Query: 572 WLDAKGIPDPPTGWPIPNQTRVTLRNEHFSYIVTWYSLFAFTS 700
WL KGIP +GW +P T VTL N T YS T+
Sbjct: 145 WLALKGIP---SGWAVPIGTSVTLPNTEDLTASTSYSFCKVTT 184
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -3
Query: 706 HNTSKCKQRIPCDNVRKVFIPQCYSGLIWDRPTSRWVWDTF 584
H+ C + CD K F+ C SGL W + W +
Sbjct: 124 HDPRNCSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDWPRY 164
>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
Length = 220
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -3
Query: 706 HNTSKCKQRIPCDNVRKVFIPQCYSGLIWDRPTSRWVWDTF 584
H+ C + CD K F+ C SGL W + W +
Sbjct: 31 HDPRNCSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDWPRY 71
>SB_50802| Best HMM Match : PRC (HMM E-Value=8.3)
Length = 426
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 180 GIFTSESKRRIFA*KRDINRS*STHEESSITNRVGSLVSDPKKNQGWLVITP 335
G FT +S++R D+N + + RV +LV K Q W+++TP
Sbjct: 115 GNFTKDSRQRFLI--YDVNPGEGFNLRRDVYMRVANLVKLLNKKQSWVLVTP 164
>SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1267
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 581 AKGIPDPPTGWPIPNQTRVTLRNEHFSYIVT 673
A G PDP W NQ TL +++ S+I+T
Sbjct: 372 ATGFPDPNYTWYRNNQVLTTLTSDNGSFIIT 402
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = -3
Query: 646 PQCYSGLIWDRPTSRWVWDTFCIQPNRQTSNMSTHLIQISVKP*AFSGLFLGMKGAL 476
P SG WD+ T R +W+ F + +R+T N+++ ++ I+V+P + GAL
Sbjct: 1392 PVLISGA-WDK-TVR-LWNVFESKVSRETLNLTSDVVSIAVRPDGREVAISSLDGAL 1445
>SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 285
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 137 TALDLACIMSMSPSFHCHLY-TCHEPRVKEVTGIISKIH 24
TAL ++ +SP + +Y TCH P K T ++ +H
Sbjct: 139 TALHARRVLHLSPPYMQDVYFTCHRPTCKTCTSPVTALH 177
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 137 TALDLACIMSMSPSFHCHLY-TCHEPRVKEVTGIISKIH 24
TAL ++ +SP + +Y TCH P K T ++ +H
Sbjct: 174 TALHARRVLHLSPPYMQDVYFTCHRPTCKTCTSPVTALH 212
>SB_54034| Best HMM Match : Tctex-1 (HMM E-Value=7.5)
Length = 255
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Frame = +2
Query: 590 IPDPPTGWPIPNQTRVTLRN-------EHFSYIVT 673
+ + PTGW IP ++ VTL N EH+SY T
Sbjct: 180 LEEVPTGWDIPYESVVTLPNLSPPKSTEHYSYCQT 214
>SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)
Length = 697
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 22 KWILLMIPVTSFTLGSWQVYRWQWK 96
KW L P+T F W + WQW+
Sbjct: 576 KW--LYFPITPFAANGWVWFGWQWR 598
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -3
Query: 691 CKQRIPCDNVRKVFIPQCYSGLIWDRPTSRWVWDTFCIQPNRQTSNMST 545
C + CD K F+ +C +GL W + W + + +R TS T
Sbjct: 1152 CSRFYQCDAFHKTFLHRCPAGLKWSVKKTACDWPRY-VDCDRTTSTPPT 1199
>SB_13131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Frame = +2
Query: 590 IPDPPTGWPIPNQTRVTLRN-------EHFSYIVT 673
+ + PTGW IP ++ VTL N EH+SY T
Sbjct: 64 LEEVPTGWDIPYESVVTLPNLSPPKSTEHYSYCQT 98
>SB_4008| Best HMM Match : Fer4 (HMM E-Value=0.16)
Length = 444
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 417 EPSLIKGPVELTGVVRLTEKRAPFMPKNNPEKAHGFTE 530
E L+ V+L G + APF+P P HGF +
Sbjct: 223 ETPLVLDVVDLLGELGFNVLVAPFLPNGKPLHVHGFMQ 260
>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1432
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = +1
Query: 7 PTEIYKWILLMIPVTSFTLGSWQVYRWQWKLGLIDMMQAKSNAVPIDMPKDFSELEKMEY 186
P ++ +L++ + ++ +GSW+ + KLGL + N P+D + EY
Sbjct: 953 PWDVSDDSMLLVGIYNYGMGSWEAIKADTKLGLSTKILPPGNL----KPQDKHLQTRAEY 1008
Query: 187 LPVKVKGEFLHE 222
L +K+ + +H+
Sbjct: 1009 L-IKLLKQVVHD 1019
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,888,948
Number of Sequences: 59808
Number of extensions: 545854
Number of successful extensions: 1247
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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