Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1443
         (846 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17910.1 68416.m02281 surfeit 1 (SURF1) identical to Surfeit ...    48   8e-06
At5g13230.1 68418.m01520 pentatricopeptide (PPR) repeat-containi...    29   2.9  
At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR cla...    28   6.8  
At2g26100.1 68415.m03132 galactosyltransferase family protein co...    28   6.8  
At2g25470.1 68415.m03050 leucine-rich repeat family protein cont...    28   6.8  
At1g50820.1 68414.m05715 hypothetical protein                          28   6.8  
At3g10113.1 68416.m01212 myb family transcription factor contain...    28   9.0  
At1g18330.1 68414.m02290 myb family transcription factor contain...    28   9.0  

>At3g17910.1 68416.m02281 surfeit 1 (SURF1) identical to Surfeit 1
           GB:AAF19609 from [Arabidopsis thaliana]
          Length = 354

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
 Frame = +1

Query: 22  KW--ILLMIP-VTSFTLGSWQVYRWQWKLGLIDMMQAKSNAVP----IDMPKDFSELEKM 180
           KW  +LL +P   +F LGSWQ+ R + K   ++  Q + N  P    ID P D   L  +
Sbjct: 72  KWSQLLLFLPGAITFGLGSWQIVRREEKFKTLEYQQQRLNMEPIKLNIDHPLD-KNLNAL 130

Query: 181 EYLPVKVKGEFLHEKEILIGPRA 249
           E+  V  KG F  ++ I +GPR+
Sbjct: 131 EFRRVSCKGVFDEQRSIYLGPRS 153



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
 Frame = +2

Query: 512 GSWFYRDLDQMSAHIGCLP---IWL-DAKGIPDPPTGWPIPNQTRVTLRN-----EHFSY 664
           G WFY D+  M+  +G LP   I++ D     D    +P+P      +R+     +H +Y
Sbjct: 270 GQWFYVDVPAMARAVG-LPENTIYVEDVHEHVDRSRPYPVPKDINTLIRSKVMPQDHLNY 328

Query: 665 IVTWYSLFAFTSIMWHR 715
            +TWYSL A  + M ++
Sbjct: 329 SITWYSLSAAVTFMAYK 345



 Score = 29.5 bits (63), Expect(2) = 0.024
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 411 KREPSLIKGPVELTGVVRLTEKRAPFMPKNNPEKAHGF 524
           K   S +K PVE+ GV+R  E  + F+P N+P     F
Sbjct: 237 KEHISAVK-PVEVVGVIRGGENPSIFVPSNDPSTGQWF 273



 Score = 25.8 bits (54), Expect(2) = 0.024
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
 Frame = +3

Query: 315 GWLVITPFK-----LADTGEVILINRGWIHQNLRPKEK 413
           G+ VITP       L      IL+NRGW+ ++ R K +
Sbjct: 163 GFFVITPLMPIPGDLDSMQSPILVNRGWVPRSWREKSQ 200


>At5g13230.1 68418.m01520 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 822

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 597 THLLVGRSQIKPE*HCG-MNTFRTLSHGILCLHLLVLCGIVSSLESYHYCK*SQKFI 764
           ++  VG + I     CG +++ RT+  GILC  ++V  GIVS      Y + S K +
Sbjct: 179 SNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLL 235


>At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 853

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 103 LIDMMQAKSNAVPIDMPK-DFSELEKMEYLPVKVKGEFLHEKEILIGPRALMKRVLSPIE 279
           L + +   SN + +D+   DF +L+ +E LP+ +K  + H  + L       K  +  ++
Sbjct: 612 LSEQLSHFSNLIHLDLSSHDFEKLKSVEELPLNLKHLYAHGCDSLESVDLSPKHSIKHLD 671

Query: 280 LVHLY 294
           L H +
Sbjct: 672 LSHCF 676


>At2g26100.1 68415.m03132 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 371

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/44 (25%), Positives = 27/44 (61%)
 Frame = -3

Query: 577 QPNRQTSNMSTHLIQISVKP*AFSGLFLGMKGALFSVNLTTPVS 446
           +PN  +S+ ++  I +++   +   +F+G+ G +F+++ T P S
Sbjct: 31  KPNSSSSSYTSSRIHVAIIFFSLVSVFIGVAGTIFALSSTGPAS 74


>At2g25470.1 68415.m03050 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to disease
           resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591
          Length = 910

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 94  KLGLIDMMQAKSNAVPIDMPKDFSELEKMEYL 189
           KL ++D+    SN +  D+P  FS LE +EYL
Sbjct: 246 KLRVLDL---SSNQLSGDLPSSFSSLESLEYL 274


>At1g50820.1 68414.m05715 hypothetical protein
          Length = 528

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 650 EHFSYIVTWYSLFAFTSIMWH 712
           EH  ++V W S FAF S ++H
Sbjct: 186 EHVGFLVLWLSYFAFPSHLFH 206


>At3g10113.1 68416.m01212 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 336

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 637 YSGLIWDRPTSRWVWDTFCIQPN 569
           YSG++ D   S  VW+TFC   N
Sbjct: 239 YSGMLVDTNLSLGVWETFCTGSN 261


>At1g18330.1 68414.m02290 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 346

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 637 YSGLIWDRPTSRWVWDTFCIQPN 569
           YSG++ D   S  VW+TFC   N
Sbjct: 249 YSGMLVDTNLSLGVWETFCTGSN 271


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,635,547
Number of Sequences: 28952
Number of extensions: 406115
Number of successful extensions: 1043
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)