Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1441
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ...    33   0.23 
At5g09640.1 68418.m01115 sinapoylglucose:choline sinapoyltransfe...    30   1.2  
At4g32790.1 68417.m04665 exostosin family protein contains Pfam ...    29   2.8  
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ...    29   3.8  
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ...    29   3.8  

>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
           protein Mei2-like protein, Arabidopsis thaliana,
           gb:D86122
          Length = 785

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +1

Query: 130 QN*PNRSSRSRILARLTNSNSFIYSFIY--IDFRN 228
           +N PN+ +R+ +LA +   NS  Y F+Y  IDF+N
Sbjct: 589 KNIPNKYTRNMLLAAIDEKNSGTYDFLYLPIDFKN 623


>At5g09640.1 68418.m01115 sinapoylglucose:choline
           sinapoyltransferase (SNG2) GC donor splice site at exon
           11 and 13; TA donor splice site at exon 10; similar to
           serine carboxypeptidase I precursor (SP:P37890) [Oryza
           sativa]; wound-inducible carboxypeptidase, Lycopersicon
           esculentum, EMBL:AF242849; contains Pfam profile
           PF00450: Serine carboxypeptidase; identical to cDNA
           sinapoylglucose:choline sinapoyltransferase (SNG2)
           GI:15418806
          Length = 465

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 66  PSIFIVFYFLNLFWTSTNNLRPKLAKSVQPFSNFSETNEQQFIYIF 203
           PS F   YFL+ FW +  N+R  L    +    ++  N Q   Y F
Sbjct: 318 PSCFTYRYFLSAFWANDENVRRALGVK-KEVGKWNRCNSQNIPYTF 362


>At4g32790.1 68417.m04665 exostosin family protein contains Pfam
           domain, PF03016: Exostosin family
          Length = 593

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 374 KCIRISYKSCAISKF*SVLNLK-FLF*VLTSLVPELKNILVSFLLRRGSEFRKSI*M 207
           +C+ +      +  F  VLN + F   VL   +P+LKNILVS    R  E +  + M
Sbjct: 505 ECVPVIISDNFVPPFFEVLNWESFAVFVLEKDIPDLKNILVSITEERYREMQMRVKM 561


>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
           protein similar to GI:6650523 from [Arabidopsis
           thaliana]
          Length = 800

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 130 QN*PNRSSRSRILARLTNSNSFIYSFIY--IDFRN 228
           +N PN+ +   +LA +   N   Y+F+Y  IDF+N
Sbjct: 658 KNIPNKYTSKMLLAAIDEKNQGTYNFLYLPIDFKN 692


>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
           protein similar to GI:6650523 from [Arabidopsis
           thaliana]
          Length = 800

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 130 QN*PNRSSRSRILARLTNSNSFIYSFIY--IDFRN 228
           +N PN+ +   +LA +   N   Y+F+Y  IDF+N
Sbjct: 658 KNIPNKYTSKMLLAAIDEKNQGTYNFLYLPIDFKN 692


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,116,280
Number of Sequences: 28952
Number of extensions: 206790
Number of successful extensions: 351
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)