Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1440
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33) 157 5e-39
SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05) 128 3e-30
SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017) 30 1.2
SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19) 29 2.2
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_10833| Best HMM Match : RNase_PH_C (HMM E-Value=0.26) 29 2.9
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 6.6
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 6.6
SB_18851| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-35) 28 6.6
SB_8648| Best HMM Match : C2 (HMM E-Value=0.98) 27 8.7
>SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)
Length = 609
Score = 157 bits (382), Expect = 5e-39
Identities = 67/85 (78%), Positives = 76/85 (89%)
Frame = +3
Query: 252 SPWPLYSMNWSVRPDKRFRLALGSFVEEYNNKVQIISLDEDTSEFTAKSTFDHPYPTTKI 431
+PW +Y MNWSVR DKRFRLALGSFVEEYNNKVQI+ LDE+T EFT +STFDHPYPTTKI
Sbjct: 25 APWTIYGMNWSVRTDKRFRLALGSFVEEYNNKVQIVMLDEETGEFTVRSTFDHPYPTTKI 84
Query: 432 MWIPDSKGVYPDLLATSGDYLRIWR 506
+WIPD+ YPDL+ATSGDYLR+WR
Sbjct: 85 IWIPDNNS-YPDLVATSGDYLRVWR 108
>SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05)
Length = 596
Score = 128 bits (309), Expect = 3e-30
Identities = 59/87 (67%), Positives = 68/87 (78%), Gaps = 3/87 (3%)
Frame = +3
Query: 252 SPWPLYSMNWSVRPDKRFRLALGSFVEEYNNKVQIISLDEDTSEFTAKSTFDHPYPTTKI 431
+PW +Y MNWSVR DKRFRLALGSFVEEYNNKVQI+ LDE+T EFT +STFDHPYPTTKI
Sbjct: 25 APWTIYGMNWSVRTDKRFRLALGSFVEEYNNKVQIVMLDEETGEFTVRSTFDHPYPTTKI 84
Query: 432 MWIPDSKGVYPDLL---ATSGDYLRIW 503
+WIPD+ V L+ T GD + W
Sbjct: 85 IWIPDN--VLLSLVMARVTQGDLIGHW 109
>SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017)
Length = 294
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 441 PDSKGVYPDLLATSGDYLRIWRAESRTHYSNVS*IIIRILTSVLLLHPLIGT 596
P G PD + DY I+ TH ++ + +R L ++ LL L GT
Sbjct: 160 PAELGCNPDGVYDPSDYRPIYHLVGHTHERTLNDLFVRTLNAIYLLRCLEGT 211
>SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19)
Length = 454
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 514 LSARHMRR*SPLVANKSGYTPL 449
L +H R P +ANK+GYTPL
Sbjct: 277 LHRKHKTRADPHIANKAGYTPL 298
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +3
Query: 237 NIQIPSPWPLYSMNWSVRPDKRFRLALGSFVEEYNNKVQIISLDEDTSEFTAK---STFD 407
++++P+ PL + ++ L+ G++ N + ISL E T + T K S +
Sbjct: 568 SLKVPTQTPLSKGTYPNTVKRQINLSKGTYP---NTVKRQISLLEGTYQNTVKRQISLLE 624
Query: 408 HPYPTTKIMWIPDSKGVYPD 467
YP T I SKG YP+
Sbjct: 625 GTYPNTVKRQISLSKGTYPN 644
>SB_10833| Best HMM Match : RNase_PH_C (HMM E-Value=0.26)
Length = 184
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -1
Query: 301 LLSGLTDQFIEYNGHGLGICIFLYVSCLNWYSNCCVASTSLIMFNVSLP 155
LL+GL ++ + + I + +C W NCCV S S+ NV LP
Sbjct: 36 LLAGLLSRWSITSSFWIYIHSKQFRTCKTWEHNCCVRSNSIP--NVDLP 82
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 234 RNIQIPSPWPLYSMNWSVRPDKRFRLAL-GSFVEEYNNKVQIISLD 368
R I S W + W R KRF+ GS+ NNK Q + +D
Sbjct: 571 RAITASSTWSPHLAPWLARLQKRFKRPYGGSWSARVNNKYQWLQVD 616
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 234 RNIQIPSPWPLYSMNWSVRPDKRFR-LALGSFVEEYNNKVQIISLD 368
RNI+ S W Y W R ++ + +G++ + NNK Q I D
Sbjct: 2085 RNIKASSEWDRYHAAWLARLHRQKKGRYVGAWSAKRNNKAQWIQFD 2130
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 27.9 bits (59), Expect = 6.6
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -3
Query: 263 WPWAWYLYISLR 228
WPW WY +I++R
Sbjct: 3119 WPWGWYRHIAMR 3130
>SB_18851| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-35)
Length = 143
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 234 RNIQIPSPWPLYSMNWSVRPDKRFRLAL-GSFVEEYNNKVQIISLD 368
R I S W + W R KRF+ GS+ NNK Q + +D
Sbjct: 7 RAITASSTWSPHLAPWLARLQKRFKRPYGGSWSARVNNKYQWLQVD 52
>SB_8648| Best HMM Match : C2 (HMM E-Value=0.98)
Length = 273
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 243 QIPSPWPLYSMNWSVRPDKRFRLA 314
++P WP + W VR K+F+LA
Sbjct: 176 RLPDDWPQQVLCWGVRNMKKFQLA 199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,543,567
Number of Sequences: 59808
Number of extensions: 418360
Number of successful extensions: 911
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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