Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1436
         (653 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E4703C Cluster: PREDICTED: similar to Nhn1A, par...    36   0.85 
UniRef50_Q9VLH3 Cluster: CG9487-PA; n=4; Sophophora|Rep: CG9487-...    33   6.0  

>UniRef50_UPI0000E4703C Cluster: PREDICTED: similar to Nhn1A,
           partial; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to Nhn1A, partial -
           Strongylocentrotus purpuratus
          Length = 513

 Score = 35.9 bits (79), Expect = 0.85
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = +3

Query: 438 EKSYSERIAGRGSF*KRLVKVSQQSRSGSRSKFNSASQRTSRSVTPKS 581
           ++SYS R   R     R    S +SRS SRS ++ +S+  SRS +P S
Sbjct: 343 DRSYSSRSRSRSDSRSRSRSFSSRSRSSSRSSYSGSSRSRSRSKSPGS 390


>UniRef50_Q9VLH3 Cluster: CG9487-PA; n=4; Sophophora|Rep: CG9487-PA -
            Drosophila melanogaster (Fruit fly)
          Length = 1857

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +3

Query: 492  VKVSQQSRSGSRSKFNSASQRTSRSVTPKS*QERQQKQVRLPCQLRD**RCNQR 653
            VKV  QS   +R  F S ++R SR  TP   + R   Q  + C  RD  R + R
Sbjct: 1384 VKVYPQSMGVARGTFASEARRNSRQSTPSPSRARSSSQSSIECCPRDRSRSSSR 1437


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,060,234
Number of Sequences: 1657284
Number of extensions: 10988137
Number of successful extensions: 26040
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25893
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)