Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1436
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_30416| Best HMM Match : Prosystemin (HMM E-Value=2.2)               30   1.9  
SB_16463| Best HMM Match : RhoGAP (HMM E-Value=5.7e-25)                30   1.9  
SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  

>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 287 DPLLDLDLEGEVICCGTENEILIWIFFLSVWNHHETFLNPQIYYGIETSCH 135
           D L+ L  + EV+ CG  N  L+W  FL    + E  ++ ++  G +   H
Sbjct: 157 DLLVPLQTDAEVLICGAGNSGLLWASFLHFRGYREVVIS-EVLKGRQKIAH 206


>SB_30416| Best HMM Match : Prosystemin (HMM E-Value=2.2)
          Length = 455

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 529 LSSIALPKEHLAASPPKVDKRDNRSKSDSPANLE 630
           L+  A  KE LA  PP+  +RD R   D+P + E
Sbjct: 413 LAVAAADKEKLAPPPPQGSQRDRRQADDTPLSSE 446


>SB_16463| Best HMM Match : RhoGAP (HMM E-Value=5.7e-25)
          Length = 252

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 529 LSSIALPKEHLAASPPKVDKRDNRSKSDSPANLE 630
           L+  A  KE LA  PP+  +RD R   D+P + E
Sbjct: 210 LAVAAADKEKLAPPPPQGSQRDRRQADDTPLSSE 243


>SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 487 GSLKSRSNHEAVRDLSSIALPKEHLAASPPKVDKRDNRSKSDSPANLEIDEDA 645
           G    +  HE   +  + A P+     SPPK  K++ +SK +     E DE+A
Sbjct: 348 GKSAKKRKHEKSDEEETAATPE---VESPPKKHKKEKKSKKEKTKTEESDEEA 397


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,586,867
Number of Sequences: 59808
Number of extensions: 345840
Number of successful extensions: 677
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)