BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1436 (653 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 29 3.6 At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG... 29 3.6 >At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing protein Length = 987 Score = 28.7 bits (61), Expect = 3.6 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +3 Query: 498 VSQQSRSGSRSKFNSASQRTSRSVTPKS*QERQQ 599 +S+ R G + +S+S R SRSV+PK + Q+ Sbjct: 573 ISESRRYGRSDEHHSSSSRRSRSVSPKKRKSGQE 606 >At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG-N) family protein similar to phosphatidylinositolglycan class N short form GB:BAA82620 [gi:5631308] [Mus musculus] Length = 921 Score = 28.7 bits (61), Expect = 3.6 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -2 Query: 640 LHQSLSWQGSLTCFCCLSCQLLGV 569 LH S+ W+ + F C+SC L V Sbjct: 631 LHFSIPWRSGIPVFVCISCWFLSV 654 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,563,991 Number of Sequences: 28952 Number of extensions: 244967 Number of successful extensions: 650 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 624 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 649 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1363910256 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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