Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1435
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8) 34 0.12
SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2) 33 0.15
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 33 0.27
SB_9952| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10) 31 1.1
SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064) 31 1.1
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 30 1.9
SB_9884| Best HMM Match : zf-BED (HMM E-Value=2.8) 30 1.9
SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_57004| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 29 3.3
SB_57086| Best HMM Match : PT (HMM E-Value=2.4) 29 3.3
SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 3.3
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11) 29 3.3
SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016) 29 4.4
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058) 28 5.8
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1) 28 5.8
SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69) 28 5.8
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13) 28 7.6
SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8)
Length = 959
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -3
Query: 600 HNILTLLPHNNDLNHITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAHHKNTHSHM*R 421
H L H+N + TA K + H+ H + +++ Q HT + +AHH H+ + +
Sbjct: 643 HTTLLKQAHHNQCH--TALLKQLHHNQCHTTLLKQVHHNQCHTTLLKQAHHNQCHTALLK 700
Query: 420 -THNTSTQFLIF 388
H+ Q +F
Sbjct: 701 QLHHNQCQTTLF 712
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -3
Query: 600 HNILTLLPHNNDLNHITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAHHKNTHS 433
H L H+N + TA K + H+ H + +++ Q HT + +AHH H+
Sbjct: 747 HTTLLKQAHHNQCH--TALLKQLHHNQCHTTLLKQVHHNQCHTTLLKQAHHNQCHT 800
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -3
Query: 606 KNHNILTLLPHNNDLNHITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAHHKNTHS 433
K H L H+N T K + H+ H + +++ Q HT + +AHH H+
Sbjct: 810 KCHTTLLKQVHHNQCQ--TTLLKQVHHNQCHTTLLKQVHHHQCHTTLLKQAHHNQCHT 865
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -3
Query: 600 HNILTLLPHNNDLNHITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAHHKNTHS 433
H L H+N + T K + H+ H + ++ Q HT + +AHH H+
Sbjct: 760 HTALLKQLHHNQCH--TTLLKQVHHNQCHTTLLKQAHHNQCHTTLLKQAHHNKCHT 813
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -3
Query: 600 HNILTLLPHNNDLNHITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAHHKNTHS 433
H L H++ + T K H+ H + L++ Q HT + +AHH H+
Sbjct: 838 HTTLLKQVHHHQCH--TTLLKQAHHNQCHTTLLKQLHHNQCHTTLLKQAHHNQCHT 891
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = -3
Query: 600 HNILTLLPHNNDLNHITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAHHKNTHS 433
H L H+N + T K + H+ H + ++ Q HT + + HH H+
Sbjct: 851 HTTLLKQAHHNQCH--TTLLKQLHHNQCHTTLLKQAHHNQCHTTLLKQVHHNKCHT 904
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = -3
Query: 591 LTLLPHNNDLNHITAYN----KLITHS*VHALI*PALYNTQTHTHFVTRAHHKNTHS 433
LT+ H ++ +H+T + K H+ H + + Q HT + +AHH H+
Sbjct: 536 LTVTQHYSNKSHVTMCHTNQPKKAHHNQCHTTLLRKADHNQCHTTLLKQAHHNQCHT 592
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = -3
Query: 600 HNILTLLPHNNDLNHITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAHHKNTHSHM*R 421
H L H+N + TA K + H+ + +++ Q HT + + HH H+ + R
Sbjct: 578 HTTLLKQAHHNQCH--TALLKQLHHNQCQTTLLKQVHHNQCHTTLLKQVHHNQCHTTLLR 635
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = -3
Query: 600 HNILTLLPHNNDLNHITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAHHKNTHSHM*R 421
H L H+N + TA K + H+ + +++ Q HT + + HH H+ + R
Sbjct: 682 HTTLLKQAHHNQCH--TALLKQLHHNQCQTTLFKQVHHNQCHTTLLKQVHHNQCHTTLLR 739
>SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 33.5 bits (73), Expect = 0.15
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Frame = -2
Query: 535 YNALMSTRTNITGTI*HTN----SHSLRNTRTS*KH----TLTHVTHSQHFNTISNISHY 380
Y AL+ + T HTN +H T TS +H T T TH +H TIS HY
Sbjct: 126 YQALVIRQLVFTQYHKHTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHITTISRTHHY 185
Query: 379 RFLGRLHGDRHSERIPVCSDGHRGQLRT 296
+H E I S H + T
Sbjct: 186 NITNT--SLQHHEHITTISRTHHEHITT 211
Score = 31.1 bits (67), Expect = 0.82
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = -2
Query: 496 TI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNISHYRFLGRLHGDRHSERIPVCS 323
TI T+ +++ NT +T + TH +H TIS HY +H E I S
Sbjct: 178 TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNT--SLQHHEHITTIS 235
Query: 322 DGHRGQLRT 296
H + T
Sbjct: 236 RTHHEHITT 244
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 496 TI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNISHY 380
TI T+ +++ NT +T + TH +H TIS HY
Sbjct: 211 TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHY 251
>SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)
Length = 225
Score = 33.5 bits (73), Expect = 0.15
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Frame = -2
Query: 535 YNALMSTRTNITGTI*HTN----SHSLRNTRTS*KH----TLTHVTHSQHFNTISNISHY 380
Y AL+ + T HTN +H T TS +H T T TH +H TIS HY
Sbjct: 59 YQALVIRQLVFTQYHKHTNIVSRTHHYNITNTSLQHHEHITTTSRTHHEHITTISRTHHY 118
Query: 379 RFLGRLHGDRHSERIPVCSDGHRGQLRT 296
+H E I S H + T
Sbjct: 119 NITNT--SLQHHEHITTISRTHHEHITT 144
Score = 31.1 bits (67), Expect = 0.82
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = -2
Query: 496 TI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNISHYRFLGRLHGDRHSERIPVCS 323
TI T+ +++ NT +T + TH +H TIS HY +H E I S
Sbjct: 111 TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHYNITNT--SLQHHEHITTIS 168
Query: 322 DGHRGQLRT 296
H + T
Sbjct: 169 RTHHEHITT 177
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 496 TI*HTNSHSLRNTRTS*KHTLTHV--THSQHFNTISNISHY 380
TI T+ +++ NT +T + TH +H TIS HY
Sbjct: 144 TISRTHHYNITNTSLQHHEHITTISRTHHEHITTISRTHHY 184
>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1841
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 198 KLISSQSGPQEYRFDGRGYAT-MAGRGYLTPQSNQVLLFFRTYAPNGLI 55
+++ ++ P+ Y FDG YA + + N V+L FRT PNGL+
Sbjct: 749 RILKRETDPEGY-FDGSAYAEYLLNDEKVDSNKNTVMLEFRTIQPNGLL 796
>SB_9952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = -1
Query: 620 NRYVLKIIIFLHYYHITMI*TILQHTINL*RTHEYTH*YNRHYI 489
N ++ III ++ IT+I TI+ I L + H Y H +NR ++
Sbjct: 91 NNIIIIIIIIVNIITITIIITIIMINIYLYQLHRYHHPHNRRHL 134
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 159 FDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGLIYLLKAS 37
F G GY G +N++ L+FRT P+GLI L S
Sbjct: 1339 FPGNGYYKFPGSYVREGTTNEIELWFRTQYPDGLILFLSDS 1379
>SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)
Length = 293
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Frame = -2
Query: 532 NALMSTRTNITGT---I*HTN--SHSLRN---TRTS*KHTLTHVTHSQHFNTISNISHYR 377
N TR N + T I HTN SH+ N TR + H TH TH +T +N SH R
Sbjct: 146 NNTSHTRNNSSHTEQLIAHTNNWSHTRNNSSHTRNNSSHGTTHRTHGTTHHTQNNSSHTR 205
>SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)
Length = 422
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 291 GQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCEC 422
GQ +SC RC + G++ EC P RP +R E L + +C
Sbjct: 198 GQPQSCLRCSEIGHGVK-ECTKPRRRPHRRRREELTTEQERMQC 240
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 51 GISSRSERTCGRREALD*IEASNNLGQPSWHIHGHRTCTLEGQTARR 191
G + E CG+R D +NN+ Q S IHG+ TL+G R
Sbjct: 684 GTNKLYECKCGQRHCGDKSNLTNNVCQFSHCIHGNCMVTLDGHRCAR 730
>SB_9884| Best HMM Match : zf-BED (HMM E-Value=2.8)
Length = 129
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = -3
Query: 609 LKNHNILTLLPHNNDLNHITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAHHKNTHSH 430
+K HN+ T HN +++ A+N + + VH + +N +TH V N H
Sbjct: 52 VKTHNVKT---HNVKTHNVKAHNVKVHNVKVHNV---KAHNVKTHNVKVHNVKAHNVKVH 105
Query: 429 M*RTHNTSTQFLIFH 385
+THN + H
Sbjct: 106 NVKTHNVKAHNVKVH 120
>SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 577
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Frame = +3
Query: 249 LSQPSCQWRPSPDPGQ---VRSCPRCPSL 326
+S P C+W P+PD G C CP L
Sbjct: 158 VSDPDCRWCPAPDCGYAVIATGCASCPKL 186
>SB_57004| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Frame = -2
Query: 556 YYSIQ*TYNALMSTRTNITGTI*HTNSHSLRN----TRTS*KHTLTHVTHSQHFNT--IS 395
+Y+++ T+ + T+T+ + HT++ L+ T+T L H TH+ H NT +
Sbjct: 52 HYALKHTHT--LCTQTHAHNALKHTHAMHLKTCTLCTQTHAHFALKH-THTMHSNTRTLC 108
Query: 394 NISH-YRFLGRLHGDRHSERIPVCSDGH 314
+H + L H HS + +C+ H
Sbjct: 109 TQTHAHNALKHTHTTMHSNKRTLCTQTH 136
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -3
Query: 600 HNILT--LLPHNNDLNHITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAHHKNTHSHM 427
H+ LT L H+N L H+ + +T+S + L Y+T TH +T +H+
Sbjct: 24 HSNLTHSTLTHSN-LTHLNLTHSTLTYSTLTHLT--LTYSTLTHLTITYSTITHSTLTHL 80
Query: 426 *RTHNTSTQFLIFHTTV 376
TH T T + H+T+
Sbjct: 81 TLTHLTLTYSTLTHSTL 97
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = -3
Query: 564 LNHITAYNKLITHS*VHALI*PAL---YNTQTHTHFV--TRAHHKNTHSHM*RTHNTSTQ 400
L H+T ITHS + L L Y+T TH+ T H THS + TH+T T
Sbjct: 62 LTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTHSTLTHSTLTHSTL--THSTITH 119
Query: 399 FLIFHTTV 376
+ H+ +
Sbjct: 120 STLTHSNL 127
>SB_57086| Best HMM Match : PT (HMM E-Value=2.4)
Length = 226
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 527 THEYTH*YNRHYITHKLT 474
TH+YTH Y H TH+ T
Sbjct: 83 THQYTHQYTHHQYTHQYT 100
>SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1814
Score = 29.1 bits (62), Expect = 3.3
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Frame = +3
Query: 270 WRPSPDPGQVRSCPRCPSLH-TGIRSECRSPCSRPKKR*CEILEIVLKCCE-CVTCVSVC 443
+R S VR C CPS++ +R PC L + + C C+ C SV
Sbjct: 349 YRVSVRVSSVRPCIVCPSVYRVSVRVSSVRPCIVCPS--VYRLSVRVSCVRPCIVCPSVY 406
Query: 444 FYDVRVLRSECEFVCYIVPVILVRV 518
+RV + VC V + VRV
Sbjct: 407 RLSIRVSSAHPCLVCPSVSRLSVRV 431
>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
Length = 1214
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 439 CVFMMCACYEVSVSLCVI*CR-LY*CVYS--*VRYKFIVCCNMVQIIVMW 579
C F CA VS CV+ CR L C+ S V + + CC + ++V++
Sbjct: 250 CAFFSCAVLYRVVSCCVVSCRVLSCCIVSCRVVSCRVLSCCIVSCLVVLY 299
>SB_13998| Best HMM Match : Kringle (HMM E-Value=0.0016)
Length = 832
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 204 WVLWSYLSTMTWYQRLSQPSC 266
WV+ SYL+ TWYQ + C
Sbjct: 65 WVITSYLTNCTWYQWTYRTDC 85
>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 28.7 bits (61), Expect = 4.4
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Frame = -3
Query: 480 THTHFVTR--AHHKNTHSHM*RTHNTSTQFLIFHTTVF*DDYMVIGIQNG-YPYVVMD-- 316
THTH TR H +TH+H H+T + H T D ++ +N +P+
Sbjct: 483 THTHETTRHDTHLYDTHTHETTRHDTHLHDMHTHETTRHDTHLHDTTENDTHPHDTTGND 542
Query: 315 --IGDSSEPGQDP-ARVSIDKMVATTAGTKS---SLTGNSTEPRD 199
+ D++E P D + T G K+ TGN T D
Sbjct: 543 TYLHDTTENDTHPHDTTGNDTQLHDTTGNKTRPHDTTGNDTHLHD 587
>SB_35733| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.058)
Length = 448
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Frame = -3
Query: 606 KNHNILTLLPHN--NDLNHITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAHHKNTHS 433
K HNI+ PH+ ++++H TA + +IT + + P Y+T + H+ +H+ ++
Sbjct: 246 KPHNII---PHHMSHNMSHNTAPHNIITTRTCYTI--P--YHTTQYYHYTNMSHNTVSYH 298
Query: 432 HM*RTHNTSTQF-LIFHTTV 376
+ H TQ+ +I H T+
Sbjct: 299 TILSLHEHVTQYRIIPHHTI 318
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -3
Query: 369 DDYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVATTAGTKSSLTGNSTEP 205
DD VIG + V D+G+++ Q S++ +V T S+ TG+ P
Sbjct: 5081 DDDAVIGFVQTFKVVPEDVGNATLTVQRTGDTSVEHIVKVTIVDDSAKTGHDVLP 5135
>SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 22 RCFEDRRLEKVYQAVRSVRAEEEKHLIRL--RRQITSA-SHRGISTAIE 159
+ EDRR+ K + R +A E++H+ + R +T A R IS A+E
Sbjct: 76 KALEDRRITKELEGRRVTKALEDRHVTKALEDRHVTKALEDRRISKALE 124
>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
Length = 2568
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 200 SLGSVELPVNDDLVPAVVATILSMETLAGSWPGSELS 310
S G+V LP + VV+ L + LAGSWPG+ S
Sbjct: 1898 STGAVLLPA---VAGEVVSASLQIALLAGSWPGNTAS 1931
>SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69)
Length = 250
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 495 LYNTQTHTHFVTRAHHKNTH 436
+YN + HT + AHH NTH
Sbjct: 19 IYNNKCHTEKASIAHHLNTH 38
>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 463 NTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDR 350
+T S TL VTHS ++++ ++SH RF G H R
Sbjct: 240 HTLVSVSLTLLGVTHSIRYHSLFSVSHTRF-GVTHSSR 276
>SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = -3
Query: 600 HNILTLLPHNNDLNHITAYNKLITHS*VHALI*PALYNTQTHTHFVTRAHHKNTHSHM*R 421
H+ TL H + N H VH+ Y TQ H H + H H+H+
Sbjct: 79 HSTRTLNTHTQHAHLTRTLNTQTPH--VHSTHTLNTY-TQQHAHSTRKLHTYTQHAHL-- 133
Query: 420 THNTSTQFLIFHT 382
T +++T+ L HT
Sbjct: 134 TRHSTTRALHTHT 146
>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 255 ATTAGTKSSLTGNSTEPRDKLISSQSGPQEY--RFDGRGYATMAGRGYLTPQ 106
ATT GTK +G S PRD+ + + PQ + + R AT G TPQ
Sbjct: 382 ATTLGTKPQPSGPSHNPRDQATTLGTKPQPWGPSHNPRDQATTLG---TTPQ 430
>SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)
Length = 470
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Frame = -3
Query: 420 THNTSTQFLIFHTTVF*DDYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVATTAG 241
TH TST+ F + D Y + P + + D PA I +T A
Sbjct: 333 THETSTKKSGFGASFSGDRYQPTISPDAPPKITLPAEDMLSSISGPAISPIQSKYSTPAQ 392
Query: 240 TKSSLTGNSTEPR-----DKLISSQSGPQEYR 160
+L+ +EPR + S SGP Y+
Sbjct: 393 ADEALSTMPSEPRASPRMQRKYSPTSGPSSYK 424
>SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1227
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -2
Query: 466 RNTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGDRHSE 341
R T ++T+ TH +H NTI +H+ + H E
Sbjct: 413 RTTHLEHENTIPRTTHHEHENTIPRTTHHEHENTIPRTTHHE 454
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,323,298
Number of Sequences: 59808
Number of extensions: 537119
Number of successful extensions: 1678
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1641
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -