BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1435 (653 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g02890.1 68416.m00284 PHD finger protein-related contains low... 31 0.51 At3g45610.1 68416.m04926 Dof-type zinc finger domain-containing ... 30 1.5 At2g16750.1 68415.m01921 protein kinase family protein contains ... 30 1.5 At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 29 2.0 At2g35350.1 68415.m04334 protein phosphatase 2C family protein /... 28 6.2 At4g26000.1 68417.m03745 KH domain-containing protein single-str... 27 8.2 At3g62800.2 68416.m07056 double-stranded RNA-binding domain (DsR... 27 8.2 At3g62800.1 68416.m07055 double-stranded RNA-binding domain (DsR... 27 8.2 At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to vil... 27 8.2 >At3g02890.1 68416.m00284 PHD finger protein-related contains low similarity to PHD-finger domain proteins Length = 963 Score = 31.5 bits (68), Expect = 0.51 Identities = 26/85 (30%), Positives = 38/85 (44%) Frame = -2 Query: 532 NALMSTRTNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGD 353 N L S+ N G+ H S + S T + S+ S+ISH L R H D Sbjct: 58 NLLRSSGVNAPGSS-HNTSSEASHLVNSNHDTSSENAESKEIIRSSDISHGPLLDRPHKD 116 Query: 352 RHSERIPVCSDGHRGQLRTWPGSGE 278 + S ++ C+D H Q R+ G G+ Sbjct: 117 QDSMKVDSCND-H--QARSTLGQGK 138 >At3g45610.1 68416.m04926 Dof-type zinc finger domain-containing protein identical to dof6 zinc finger protein GI:5689615 from [Arabidopsis thaliana] Length = 245 Score = 29.9 bits (64), Expect = 1.5 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +3 Query: 240 YQRLSQPSCQWRPSPDPGQVRSCPRCPSLHT 332 YQ +P RP+P P Q CPRC S +T Sbjct: 21 YQNQKKPLSATRPAP-PEQSLRCPRCDSTNT 50 >At2g16750.1 68415.m01921 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain Length = 617 Score = 29.9 bits (64), Expect = 1.5 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 393 LEIVLKCCECVTCVSVCFYDVRVLRSECEFVCYIVPVI 506 LE V K +CV V VCF R L+S+ Y+ P I Sbjct: 32 LEEVAKHGDCVVVVHVCFTYYRALKSKSSLDRYLKPYI 69 >At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 WD-40 repeats (PF0400); similar to WD-40 repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana] Length = 496 Score = 29.5 bits (63), Expect = 2.0 Identities = 24/92 (26%), Positives = 37/92 (40%) Frame = -3 Query: 492 YNTQTHTHFVTRAHHKNTHSHM*RTHNTSTQFLIFHTTVF*DDYMVIGIQNGYPYVVMDI 313 Y T H V R +S + TH S LI++T D Y V+G + P +++ I Sbjct: 147 YKTIIHPGEVNRIRELPQNSKIVATHTDSPDILIWNTETQPDRYAVLGAPDSRPDLLL-I 205 Query: 312 GDSSEPGQDPARVSIDKMVATTAGTKSSLTGN 217 G + A + V + KS + N Sbjct: 206 GHQDDAEFALAMCPTEPFVLSGGKDKSVILWN 237 >At2g35350.1 68415.m04334 protein phosphatase 2C family protein / PP2C family protein similar to protein phosphatase-2c (GI:3608412) [Mesembryanthemum crystallinum]; contains Pfam PF00481 : Protein phosphatase 2C domain Length = 783 Score = 27.9 bits (59), Expect = 6.2 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = +3 Query: 246 RLSQPSCQWRPSP--DPGQVRSCPRCPSLHTGIRS 344 R P+ +R SP +PG++R LHTG R+ Sbjct: 67 RFVSPTASFRLSPPHEPGRIRGSGSSEQLHTGFRA 101 >At4g26000.1 68417.m03745 KH domain-containing protein single-stranded nucleic acid-binding protein CBP - mouse, PIR2:S78515 Length = 495 Score = 27.5 bits (58), Expect = 8.2 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = +2 Query: 206 GSVELPVNDDLVPAVVATILSMETLAGSWP 295 GS+ LP N++L+PA + ++ +G++P Sbjct: 12 GSINLPENENLIPAGFSAAALLDENSGAFP 41 >At3g62800.2 68416.m07056 double-stranded RNA-binding domain (DsRBD)-containing protein weak similarity to SP|P19525 Interferon-induced, double-stranded RNA-activated protein kinase (EC 2.7.1.-) {Homo sapiens}; contains Pfam profile PF00035: Double-stranded RNA binding motif Length = 355 Score = 27.5 bits (58), Expect = 8.2 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = +2 Query: 179 DCEEINLSLGSVELPVNDDLVPAVVATILSMETLAGSWPGSELSPMSITTYGYP 340 + +EIN++L E P ND + A+ + M + S P +P ++ T P Sbjct: 216 NAKEINVALNEPENPTNDGTLSALTTDGMKMNIASSSLPIPH-NPTNVITLNAP 268 >At3g62800.1 68416.m07055 double-stranded RNA-binding domain (DsRBD)-containing protein weak similarity to SP|P19525 Interferon-induced, double-stranded RNA-activated protein kinase (EC 2.7.1.-) {Homo sapiens}; contains Pfam profile PF00035: Double-stranded RNA binding motif Length = 355 Score = 27.5 bits (58), Expect = 8.2 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = +2 Query: 179 DCEEINLSLGSVELPVNDDLVPAVVATILSMETLAGSWPGSELSPMSITTYGYP 340 + +EIN++L E P ND + A+ + M + S P +P ++ T P Sbjct: 216 NAKEINVALNEPENPTNDGTLSALTTDGMKMNIASSSLPIPH-NPTNVITLNAP 268 >At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to villin 3 (VLN3) [Arabidopsis thaliana] GI:3415117 Length = 965 Score = 27.5 bits (58), Expect = 8.2 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = -3 Query: 315 IGDSSEPGQDPARVSIDKMVATTAGTKSSLTGNSTEPRDKLISSQSGPQE 166 + D S G R + A T+ SS S+ RD+ SQ GP++ Sbjct: 745 VEDQSSSGNQGPRQRAAALAALTSAFNSSSGRTSSPSRDRSNGSQGGPRQ 794 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,016,354 Number of Sequences: 28952 Number of extensions: 340481 Number of successful extensions: 963 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 933 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 963 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1363910256 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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