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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1435
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02890.1 68416.m00284 PHD finger protein-related contains low...    31   0.51 
At3g45610.1 68416.m04926 Dof-type zinc finger domain-containing ...    30   1.5  
At2g16750.1 68415.m01921 protein kinase family protein contains ...    30   1.5  
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ...    29   2.0  
At2g35350.1 68415.m04334 protein phosphatase 2C family protein /...    28   6.2  
At4g26000.1 68417.m03745 KH domain-containing protein single-str...    27   8.2  
At3g62800.2 68416.m07056 double-stranded RNA-binding domain (DsR...    27   8.2  
At3g62800.1 68416.m07055 double-stranded RNA-binding domain (DsR...    27   8.2  
At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to vil...    27   8.2  

>At3g02890.1 68416.m00284 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 963

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 26/85 (30%), Positives = 38/85 (44%)
 Frame = -2

Query: 532 NALMSTRTNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGD 353
           N L S+  N  G+  H  S    +   S   T +    S+     S+ISH   L R H D
Sbjct: 58  NLLRSSGVNAPGSS-HNTSSEASHLVNSNHDTSSENAESKEIIRSSDISHGPLLDRPHKD 116

Query: 352 RHSERIPVCSDGHRGQLRTWPGSGE 278
           + S ++  C+D H  Q R+  G G+
Sbjct: 117 QDSMKVDSCND-H--QARSTLGQGK 138


>At3g45610.1 68416.m04926 Dof-type zinc finger domain-containing
           protein identical to dof6 zinc finger protein GI:5689615
           from [Arabidopsis thaliana]
          Length = 245

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 240 YQRLSQPSCQWRPSPDPGQVRSCPRCPSLHT 332
           YQ   +P    RP+P P Q   CPRC S +T
Sbjct: 21  YQNQKKPLSATRPAP-PEQSLRCPRCDSTNT 50


>At2g16750.1 68415.m01921 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 617

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 393 LEIVLKCCECVTCVSVCFYDVRVLRSECEFVCYIVPVI 506
           LE V K  +CV  V VCF   R L+S+     Y+ P I
Sbjct: 32  LEEVAKHGDCVVVVHVCFTYYRALKSKSSLDRYLKPYI 69


>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
           WD-40 repeats (PF0400);  similar to WD-40 repeat protein
           MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 496

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 24/92 (26%), Positives = 37/92 (40%)
 Frame = -3

Query: 492 YNTQTHTHFVTRAHHKNTHSHM*RTHNTSTQFLIFHTTVF*DDYMVIGIQNGYPYVVMDI 313
           Y T  H   V R      +S +  TH  S   LI++T    D Y V+G  +  P +++ I
Sbjct: 147 YKTIIHPGEVNRIRELPQNSKIVATHTDSPDILIWNTETQPDRYAVLGAPDSRPDLLL-I 205

Query: 312 GDSSEPGQDPARVSIDKMVATTAGTKSSLTGN 217
           G   +     A    +  V +    KS +  N
Sbjct: 206 GHQDDAEFALAMCPTEPFVLSGGKDKSVILWN 237


>At2g35350.1 68415.m04334 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 783

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 246 RLSQPSCQWRPSP--DPGQVRSCPRCPSLHTGIRS 344
           R   P+  +R SP  +PG++R       LHTG R+
Sbjct: 67  RFVSPTASFRLSPPHEPGRIRGSGSSEQLHTGFRA 101


>At4g26000.1 68417.m03745 KH domain-containing protein
           single-stranded nucleic acid-binding protein CBP -
           mouse, PIR2:S78515
          Length = 495

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 206 GSVELPVNDDLVPAVVATILSMETLAGSWP 295
           GS+ LP N++L+PA  +    ++  +G++P
Sbjct: 12  GSINLPENENLIPAGFSAAALLDENSGAFP 41


>At3g62800.2 68416.m07056 double-stranded RNA-binding domain
           (DsRBD)-containing protein weak similarity to  SP|P19525
           Interferon-induced, double-stranded RNA-activated
           protein kinase (EC 2.7.1.-) {Homo sapiens}; contains
           Pfam profile PF00035: Double-stranded RNA binding motif
          Length = 355

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 179 DCEEINLSLGSVELPVNDDLVPAVVATILSMETLAGSWPGSELSPMSITTYGYP 340
           + +EIN++L   E P ND  + A+    + M   + S P    +P ++ T   P
Sbjct: 216 NAKEINVALNEPENPTNDGTLSALTTDGMKMNIASSSLPIPH-NPTNVITLNAP 268


>At3g62800.1 68416.m07055 double-stranded RNA-binding domain
           (DsRBD)-containing protein weak similarity to  SP|P19525
           Interferon-induced, double-stranded RNA-activated
           protein kinase (EC 2.7.1.-) {Homo sapiens}; contains
           Pfam profile PF00035: Double-stranded RNA binding motif
          Length = 355

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 179 DCEEINLSLGSVELPVNDDLVPAVVATILSMETLAGSWPGSELSPMSITTYGYP 340
           + +EIN++L   E P ND  + A+    + M   + S P    +P ++ T   P
Sbjct: 216 NAKEINVALNEPENPTNDGTLSALTTDGMKMNIASSSLPIPH-NPTNVITLNAP 268


>At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to villin
           3 (VLN3) [Arabidopsis thaliana] GI:3415117
          Length = 965

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 315 IGDSSEPGQDPARVSIDKMVATTAGTKSSLTGNSTEPRDKLISSQSGPQE 166
           + D S  G    R     + A T+   SS    S+  RD+   SQ GP++
Sbjct: 745 VEDQSSSGNQGPRQRAAALAALTSAFNSSSGRTSSPSRDRSNGSQGGPRQ 794


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,016,354
Number of Sequences: 28952
Number of extensions: 340481
Number of successful extensions: 963
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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