Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1434
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    25   0.43 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    25   0.57 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   7.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.0  

>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 460 MNHNLFKSCEAGVIDYLILVTQ 525
           +N NLFKS  A ++ YL+++ Q
Sbjct: 392 VNRNLFKSLLATMVTYLVVLLQ 413


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory
          receptor candidate 48 protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 7  HVMCLFPMTVNV 42
          H +CLFP+T+N+
Sbjct: 31 HFICLFPITINI 42


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -2

Query: 203 YYQRELIFTFNSNRIRVVRFIL*ENY-YYLTIWY**HCILKS*TLYFYFYFLSITTFTVI 27
           +Y   +IFT +     V+  +L   Y YY  I +  H +L     YFY+  L      +I
Sbjct: 215 FYSAFIIFTIHLLFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAFII 274

Query: 26  GNRHM 12
              H+
Sbjct: 275 FTMHL 279


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 517 PKSNNLSPQPH 485
           PKS +LSP PH
Sbjct: 273 PKSASLSPPPH 283


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 69  IKCLAF*DTMSLIPYC 116
           +KCLAF  T  +I YC
Sbjct: 62  VKCLAFFCTALVIFYC 77


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 69  IKCLAF*DTMSLIPYC 116
           +KCLAF  T  +I YC
Sbjct: 295 VKCLAFFCTALVIFYC 310


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 69  IKCLAF*DTMSLIPYC 116
           +KCLAF  T  +I YC
Sbjct: 295 VKCLAFFCTALVIFYC 310


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,361
Number of Sequences: 336
Number of extensions: 3304
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)