Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1434
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   4.6  
SB_20688| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_15469| Best HMM Match : RVT_1 (HMM E-Value=0.00014)                 28   8.0  

>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 510 DFGDATLTNIMEYA-ESDQLLIDVLKKIEEMQRNHD 614
           D G  TL N  +Y+  S ++LID + ++EE Q N D
Sbjct: 50  DQGKNTLDNANKYSPSSSEMLIDYVTQLEENQENAD 85


>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1507

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 322  VVKEINGCDGSFIVNCVISYCIKRNSPLLIVSSHNSITH 438
            VV  +NG     I  C +S+C  R+S  L +  H S  H
Sbjct: 1366 VVLILNGSARHTITICNVSHCSARHSITLCIGGHGSARH 1404


>SB_20688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 322 VVKEINGCDGSFIVNCVISYCIKRNSPLLIVSSHNSITH 438
           VV  +NG     I  C +S+C  R+S  L +  H S  H
Sbjct: 24  VVLILNGSARHTITICNVSHCSARHSITLCIGGHGSARH 62


>SB_15469| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
          Length = 709

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 283 CLQLQKNISTNRIVVKEINGCDGSFIVN 366
           CL+   N+ST RI  +E   C+G   +N
Sbjct: 412 CLEFLSNLSTPRITEEEKTKCEGKLTLN 439


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,646,614
Number of Sequences: 59808
Number of extensions: 336694
Number of successful extensions: 647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)