Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1434
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF273807-1|AAG15156.1|  416|Caenorhabditis elegans nuclear recep...    31   0.76 
AF016675-1|AAF02172.2|  416|Caenorhabditis elegans Nuclear hormo...    31   0.76 
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    28   7.0  

>AF273807-1|AAG15156.1|  416|Caenorhabditis elegans nuclear receptor
           NHR-59 protein.
          Length = 416

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -1

Query: 186 NIHFQFK*NTRCAIYL--IRKLLLFNNMVLMTLYPKKLNTLFLFLFPVHNHIYSHREQAH 13
           ++H  +    R  +Y   I+K++  NNMVL  ++ +K       +F + N  +SH E   
Sbjct: 354 DLHSYYIKEMRLPVYSSRIQKMMKVNNMVLRVMWERKEKLSIARMFNIFNPNFSHPELVK 413

Query: 12  DM 7
           D+
Sbjct: 414 DV 415


>AF016675-1|AAF02172.2|  416|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 59 protein.
          Length = 416

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -1

Query: 186 NIHFQFK*NTRCAIYL--IRKLLLFNNMVLMTLYPKKLNTLFLFLFPVHNHIYSHREQAH 13
           ++H  +    R  +Y   I+K++  NNMVL  ++ +K       +F + N  +SH E   
Sbjct: 354 DLHSYYIKEMRLPVYSSRIQKMMKVNNMVLRVMWERKEKLSIARMFNIFNPNFSHPELVK 413

Query: 12  DM 7
           D+
Sbjct: 414 DV 415


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 279 IMSTIAEKYIYQQDCG*RNKWL*WFIHCQLCYQLLY 386
           I S  +  YI+   C   + W  +F HC +C+ L +
Sbjct: 83  IFSDFSLVYIFHGPCKYVSPWFCYFCHCFMCHALAH 118


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 522  ATLTNIMEYAESDQLLIDVLKKIEEMQRNHD 614
            AT+ NI+E  ++ Q +   L+KIEE +RN +
Sbjct: 1741 ATIHNIVELEDASQKVSANLRKIEEHRRNSE 1771


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,450,989
Number of Sequences: 27780
Number of extensions: 279068
Number of successful extensions: 666
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)