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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1434
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43290.1 68415.m05382 calmodulin-like protein (MSS3) identica...    29   3.7  
At1g24610.1 68414.m03096 SET domain-containing protein low simil...    29   3.7  
At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family pro...    28   6.5  
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro...    28   6.5  
At5g37910.1 68418.m04567 seven in absentia (SINA) family protein...    27   8.6  
At3g18670.1 68416.m02371 ankyrin repeat family protein contains ...    27   8.6  
At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related si...    27   8.6  

>At2g43290.1 68415.m05382 calmodulin-like protein (MSS3) identical
           to calmodulin-like MSS3 from GI:9965747 [Arabidopsis
           thaliana]
          Length = 215

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -1

Query: 141 LIRKLLLFN--NMVLMTLYPKKLNTLF 67
           ++R  LL+N  N  L++L PKKL TLF
Sbjct: 1   MVRIFLLYNILNSFLLSLVPKKLRTLF 27


>At1g24610.1 68414.m03096 SET domain-containing protein low
           similarity to SP|Q43088 Ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (EC 2.1.1.127)
           {Pisum sativum}; contains Pfam profile PF00856: SET
           domain
          Length = 476

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 313 NRIVVKEINGCDGSFIVNCVISYCIKRNSPLLI 411
           N  +++E NG D + +V  V    +K N PLL+
Sbjct: 247 NARIIQEQNGADSNTLVKVVAETEVKENDPLLL 279


>At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family
           protein low similarity to ubiquitin-conjugating
           BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
           ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 907

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 430 ITHYHNVGLRMNHNLFKS 483
           + HYH+ G+R+N NL++S
Sbjct: 727 MVHYHSGGMRLNPNLYES 744


>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family
           protein similar to ubiquitin-conjugating enzyme
           GB:3319990 from [Mus musculus]; contains Pfam profile
           PF00179: Ubiquitin-conjugating enzyme
          Length = 1163

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 436 HYHNVGLRMNHNLFK 480
           HYH+ GLR+N NL+K
Sbjct: 672 HYHSGGLRINPNLYK 686


>At5g37910.1 68418.m04567 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 276

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -1

Query: 261 PASTC*FILFYSQMNYY*KILPT*TNIHFQFK*NTRCAIYLIRKLLLFNNMVLMTLYPKK 82
           P+S C +   Y  +  + K+  + TNI +  K   RCA +    +L+ + +++  ++ KK
Sbjct: 127 PSSVCDYTGSYKDLYAHYKLTHS-TNIFWNIK-RFRCANFFTTSMLISDKILIKRVHEKK 184

Query: 81  L 79
           L
Sbjct: 185 L 185


>At3g18670.1 68416.m02371 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 598

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 445 NVGLRMNHNLFKSCEAGVIDYLILVTQH*P-I*WS 546
           N GL  N  LFK+ E G+++Y+  + +H P I WS
Sbjct: 286 NAGL--NQALFKAVENGIVEYIEEMMRHYPDIVWS 318


>At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related
           similar to ubiquitin-conjugating enzyme (GI:3319990)
           [Mus musculus]; similar to Baculoviral IAP
           repeat-containing protein 6 (Ubiquitin-conjugating
           BIR-domain enzyme apollon) (Swiss-Prot:Q9NR09) [Homo
           sapiens];
          Length = 609

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 430 ITHYHNVGLRMNHNLF 477
           I HYH+ GLR+N NL+
Sbjct: 397 IVHYHSGGLRINPNLY 412


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,860
Number of Sequences: 28952
Number of extensions: 239054
Number of successful extensions: 466
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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