BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1434 (678 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g43290.1 68415.m05382 calmodulin-like protein (MSS3) identica... 29 3.7 At1g24610.1 68414.m03096 SET domain-containing protein low simil... 29 3.7 At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family pro... 28 6.5 At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro... 28 6.5 At5g37910.1 68418.m04567 seven in absentia (SINA) family protein... 27 8.6 At3g18670.1 68416.m02371 ankyrin repeat family protein contains ... 27 8.6 At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related si... 27 8.6 >At2g43290.1 68415.m05382 calmodulin-like protein (MSS3) identical to calmodulin-like MSS3 from GI:9965747 [Arabidopsis thaliana] Length = 215 Score = 28.7 bits (61), Expect = 3.7 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%) Frame = -1 Query: 141 LIRKLLLFN--NMVLMTLYPKKLNTLF 67 ++R LL+N N L++L PKKL TLF Sbjct: 1 MVRIFLLYNILNSFLLSLVPKKLRTLF 27 >At1g24610.1 68414.m03096 SET domain-containing protein low similarity to SP|Q43088 Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N- methyltransferase, chloroplast precursor (EC 2.1.1.127) {Pisum sativum}; contains Pfam profile PF00856: SET domain Length = 476 Score = 28.7 bits (61), Expect = 3.7 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +1 Query: 313 NRIVVKEINGCDGSFIVNCVISYCIKRNSPLLI 411 N +++E NG D + +V V +K N PLL+ Sbjct: 247 NARIIQEQNGADSNTLVKVVAETEVKENDPLLL 279 >At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family protein low similarity to ubiquitin-conjugating BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831, ubiquitin-conjugating enzyme [Mus musculus] GI:3319990; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme Length = 907 Score = 27.9 bits (59), Expect = 6.5 Identities = 9/18 (50%), Positives = 15/18 (83%) Frame = +1 Query: 430 ITHYHNVGLRMNHNLFKS 483 + HYH+ G+R+N NL++S Sbjct: 727 MVHYHSGGMRLNPNLYES 744 >At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family protein similar to ubiquitin-conjugating enzyme GB:3319990 from [Mus musculus]; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme Length = 1163 Score = 27.9 bits (59), Expect = 6.5 Identities = 10/15 (66%), Positives = 13/15 (86%) Frame = +1 Query: 436 HYHNVGLRMNHNLFK 480 HYH+ GLR+N NL+K Sbjct: 672 HYHSGGLRINPNLYK 686 >At5g37910.1 68418.m04567 seven in absentia (SINA) family protein similar to SIAH1 protein [Brassica napus var. napus] GI:7657876; contains Pfam profile PF03145: Seven in absentia protein family Length = 276 Score = 27.5 bits (58), Expect = 8.6 Identities = 16/61 (26%), Positives = 32/61 (52%) Frame = -1 Query: 261 PASTC*FILFYSQMNYY*KILPT*TNIHFQFK*NTRCAIYLIRKLLLFNNMVLMTLYPKK 82 P+S C + Y + + K+ + TNI + K RCA + +L+ + +++ ++ KK Sbjct: 127 PSSVCDYTGSYKDLYAHYKLTHS-TNIFWNIK-RFRCANFFTTSMLISDKILIKRVHEKK 184 Query: 81 L 79 L Sbjct: 185 L 185 >At3g18670.1 68416.m02371 ankyrin repeat family protein contains ankyrin repeats, Pfam domain PF00023 Length = 598 Score = 27.5 bits (58), Expect = 8.6 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = +1 Query: 445 NVGLRMNHNLFKSCEAGVIDYLILVTQH*P-I*WS 546 N GL N LFK+ E G+++Y+ + +H P I WS Sbjct: 286 NAGL--NQALFKAVENGIVEYIEEMMRHYPDIVWS 318 >At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related similar to ubiquitin-conjugating enzyme (GI:3319990) [Mus musculus]; similar to Baculoviral IAP repeat-containing protein 6 (Ubiquitin-conjugating BIR-domain enzyme apollon) (Swiss-Prot:Q9NR09) [Homo sapiens]; Length = 609 Score = 27.5 bits (58), Expect = 8.6 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +1 Query: 430 ITHYHNVGLRMNHNLF 477 I HYH+ GLR+N NL+ Sbjct: 397 IVHYHSGGLRINPNLY 412 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,080,860 Number of Sequences: 28952 Number of extensions: 239054 Number of successful extensions: 466 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 458 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 466 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1428369392 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -