Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1433X
(583 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 61 6e-10
SB_13524| Best HMM Match : K_tetra (HMM E-Value=3.7e-18) 42 4e-04
SB_831| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.097
SB_48805| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32) 29 2.1
SB_29416| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_59344| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_19644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38) 27 8.5
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 61.3 bits (142), Expect = 6e-10
Identities = 28/74 (37%), Positives = 49/74 (66%)
Frame = +2
Query: 248 QENEEVARKLAMVEADLXXXXXXXXXXXXKIVELEEELRVVGNNLKSLEVSEEKATKREE 427
++ EE++ +L +E +L ++ ELEEE+ +VGNNL+SLE+SE KA++RE+
Sbjct: 118 KQYEEISERLQELENELEEAEQKADAAEARVKELEEEVTLVGNNLRSLEISEGKASERED 177
Query: 428 TYXTHLKLLDAQLK 469
TY ++ L+ +L+
Sbjct: 178 TYENQIRELETKLQ 191
>SB_13524| Best HMM Match : K_tetra (HMM E-Value=3.7e-18)
Length = 495
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = +2
Query: 260 EVARKLAMVEADLXXXXXXXXXXXXKIVELEEELRVVGNNLKSLEVSEEKATKREETYXT 439
EV R+L + ++L ++ ELE L+V G +++ L +SEEK +E+ +
Sbjct: 375 EVQRRLTLTTSELHKIRARQREKEEEVRELENRLKVGGRSIQQLVISEEKYCDKEDEFRH 434
Query: 440 HLKLLDAQL 466
++LL A L
Sbjct: 435 RIRLLKANL 443
>SB_831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 33.9 bits (74), Expect = 0.097
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = +2
Query: 260 EVARKLAMVEADLXXXXXXXXXXXXKIVELEEELRVVGNNLKSLEVSEEKATKREETYXT 439
E RK +V DL +I LE + N++ LE S ++A +REE
Sbjct: 115 EAERKEVVVTRDLERAIEKGRTLENRIQSLESTMGNALTNIQKLEASGDEAYEREELKEE 174
Query: 440 HLKLLDAQLK 469
LK QLK
Sbjct: 175 KLKFFQEQLK 184
>SB_48805| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32)
Length = 427
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 243 SDKKTKRLLVSWPWLRLTWSA 305
S + +RL++ PWLRL WSA
Sbjct: 380 SSRPIRRLVLRLPWLRLLWSA 400
>SB_29416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +2
Query: 251 ENEEVARKLAMVEADLXXXXXXXXXXXXKIVELEEELRVVGNNLKSLEVSEEKATKREET 430
+N E+ +K+ + E +L I LE + N+ SLE + A++ E
Sbjct: 120 DNTEINQKIVVTETELSKVNERLERALETIERLEATIEEESTNMASLEQKDTDASQWEIE 179
Query: 431 YXTHLKLLDAQLK 469
+ L+ QLK
Sbjct: 180 VEEKIGFLNEQLK 192
>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 999
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = -3
Query: 368 RHGAPPQA--QRFWIRRTRHAPRRAPSQPQP 282
RH PP QR W+ +RH P Q QP
Sbjct: 942 RHAPPPPTLTQRAWVPGSRHTADCIPGQVQP 972
>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 221 RRTHRRGVGQENEEVARKLAMVEADLXXXXXXXXXXXXKIVELEEEL 361
+R+ + + EN EV RK +E L K++EL EEL
Sbjct: 767 KRSRVKELEDENREVKRKAEELEKSLNDKNLKLAASEEKVIELAEEL 813
>SB_59344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 571 CSFRARPPDRLQAYRPPF 518
CS R PPD L+ Y+P F
Sbjct: 37 CSVRNDPPDELRGYKPAF 54
>SB_19644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = -3
Query: 368 RHGAPPQA--QRFWIRRTRHAPRRAPSQPQP 282
RH PP QR W+ +RH P Q QP
Sbjct: 53 RHAPPPPTLTQRAWVPGSRHTADCIPGQVQP 83
>SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 481 TCRVRRAFREKLQKEVDRLEDDLVAEREKSK 573
TC R R+ +KE+ + +++L E+++SK
Sbjct: 985 TCNTSRMMRQDQEKELKKFKENLKEEQKRSK 1015
>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
Length = 525
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 259 FVFLSDSSAMSSPVTVEPPRWQRDHPP 179
+VF++DS+A+ PPR QR PP
Sbjct: 441 YVFINDSTALQHGRVPLPPRLQRRVPP 467
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,573,615
Number of Sequences: 59808
Number of extensions: 272179
Number of successful extensions: 1169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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