Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1433X
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43583.1 68416.m04636 hypothetical protein                          31   0.56 
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P...    28   4.0  
At2g31690.1 68415.m03868 lipase class 3 family protein similar t...    27   6.9  
At2g43440.1 68415.m05399 F-box family protein contains Pfam PF00...    27   9.1  
At1g78430.1 68414.m09139 tropomyosin-related similar to Tropomyo...    27   9.1  
At1g48550.1 68414.m05429 vacuolar protein sorting-associated pro...    27   9.1  

>At3g43583.1 68416.m04636 hypothetical protein
          Length = 100

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 356 PPQAQRFWIRRTRHAPRRAPSQPQPWPAYEQP 261
           PP  + F   R+ H P   P  P+P P+ E P
Sbjct: 7   PPHCRGFHCHRSNHRPPEKPPSPEPPPSPEPP 38


>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
           At1g25886, At4g03300
          Length = 1139

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 368 RHGAPPQAQRFWIRRTRHAPRRAPSQP 288
           +   PPQ +  +++R R+AP  +P +P
Sbjct: 407 KQSRPPQLEETYVKRKRNAPGPSPKEP 433


>At2g31690.1 68415.m03868 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile PF01764: Lipase
          Length = 484

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 247 SDSSAMSSPVTVEPPRWQRDHPPCWCGSPAPC 152
           S SS++ +PV +  P      PP +C    PC
Sbjct: 48  SSSSSLLAPVILNSPVASSSPPPIYCAPKFPC 79


>At2g43440.1 68415.m05399 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 791

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 261 RLLVSWPWLRLTWSAPRSVPSPAN 332
           R++VSWPW +  W  P SV    N
Sbjct: 673 RVVVSWPWQK-RWFTPVSVSKQGN 695


>At1g78430.1 68414.m09139 tropomyosin-related similar to Tropomyosin
           1 [Baker's yeast](SP:P17536) {Saccharomyces cerevisiae};
           similar to enterophilin-2L (GI:12718845) [Cavia
           porcellus]; similar to latent nuclear antigen
           (GI:5669894) [Human herpesvirus 8]; similar to multiple
           ligand-binding protein 1 (GI:1403575) [Streptococcus
           sp.]
          Length = 326

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/77 (20%), Positives = 30/77 (38%)
 Frame = +2

Query: 233 RRGVGQENEEVARKLAMVEADLXXXXXXXXXXXXKIVELEEELRVVGNNLKSLEVSEEKA 412
           R  + +ENE +  +L   + ++            K+ ++ EEL         L+   E  
Sbjct: 175 RVSLSEENETLKDQLKKTDTEMSCAKAKEDEIASKVSQIGEELEESNETTAKLKKKLESV 234

Query: 413 TKREETYXTHLKLLDAQ 463
            + +ET    +K L  Q
Sbjct: 235 EEAKETLEAEMKKLKVQ 251


>At1g48550.1 68414.m05429 vacuolar protein sorting-associated
           protein 26 family protein / VPS26 family protein
           contains Pfam profile PF03643: Vacuolar protein
           sorting-associated protein 26
          Length = 327

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 311 PRRAPSQPQPWPAYEQPLRFLVRLLGDEFAC 219
           P+  P+ P+ W A E+    LVR   D+F+C
Sbjct: 297 PKSDPTAPRLWMALERLPLELVRTKRDQFSC 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,063,254
Number of Sequences: 28952
Number of extensions: 186175
Number of successful extensions: 684
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)