Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1252
(787 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 126 3e-29
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 51 1e-06
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 51 1e-06
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 45 6e-05
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 42 7e-04
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 39 0.005
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.021
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 36 0.028
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 36 0.049
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 35 0.086
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.086
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 33 0.26
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 31 0.80
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 30 1.8
SB_24445| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_54337| Best HMM Match : Ank (HMM E-Value=0.0052) 28 9.9
SB_33822| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0022) 28 9.9
SB_26235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 126 bits (303), Expect = 3e-29
Identities = 55/81 (67%), Positives = 63/81 (77%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +FVL MLSRVD+ K YPQV+CLSPTYELA QTG+VA M K CP IK+ YAVRG +
Sbjct: 155 KTAAFVLTMLSRVDATKPYPQVICLSPTYELARQTGKVAEAMGKHCPHIKINYAVRGNQF 214
Query: 679 PRGSKITDHILIGTPGKMFDW 741
PRG K TDHI+IGTPG + DW
Sbjct: 215 PRGQKCTDHIIIGTPGTLLDW 235
Score = 122 bits (295), Expect = 3e-28
Identities = 59/85 (69%), Positives = 68/85 (80%)
Frame = +2
Query: 254 LMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQET 433
L K++R LV +K ++E+ R DP+SPLYS K+FE L L NL +GVY MGFN PSKIQET
Sbjct: 73 LTKLLRDKLVVTKHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQET 132
Query: 434 ALPTLLADPPQNMIAQSQSGTGKTA 508
ALP LLADPP NMIAQSQSGTGKTA
Sbjct: 133 ALPMLLADPPVNMIAQSQSGTGKTA 157
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/77 (37%), Positives = 45/77 (58%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAPLF*RC* 529
FE LK LL G++ GF+ PS IQE ++P LA ++++A++++GTGKTA
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAG--RDILARAKNGTGKTAAYLVPLL 106
Query: 530 AELTLTRIILKYCVLVP 580
T+ ++ VLVP
Sbjct: 107 ERTDTTKNCIQALVLVP 123
Score = 41.5 bits (93), Expect = 7e-04
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFC-PEIKLK---YAVR 666
K ++++ +L R D+ KN Q L L PT ELA+QT ++ ++ K ++ + +++
Sbjct: 97 KTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLK 156
Query: 667 GEELPRGSK-----ITDHILIGTPGKMFD 738
+ L +K + H+++ TPG++ D
Sbjct: 157 DDILRLYNKDIFVHVVVHVIVATPGRVLD 185
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/77 (37%), Positives = 45/77 (58%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAPLF*RC* 529
FE LK LL G++ GF+ PS IQE ++P LA ++++A++++GTGKTA
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAG--RDILARAKNGTGKTAAYLVPLL 106
Query: 530 AELTLTRIILKYCVLVP 580
T+ ++ VLVP
Sbjct: 107 ERTDTTKNCIQALVLVP 123
Score = 41.5 bits (93), Expect = 7e-04
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFC-PEIKLK---YAVR 666
K ++++ +L R D+ KN Q L L PT ELA+QT ++ ++ K ++ + +++
Sbjct: 97 KTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLK 156
Query: 667 GEELPRGSK-----ITDHILIGTPGKMFD 738
+ L +K + H+++ TPG++ D
Sbjct: 157 DDILRLYNKDIFVHVVVHVIVATPGRVLD 185
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 46.4 bits (105), Expect = 3e-05
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F +++L +D+ PQ L LSPT ELA Q +V + + ++ + G +
Sbjct: 47 KTATFSISVLQAIDTQLREPQALVLSPTRELANQIQKVVLALGDYM-SVQCHACIGGTNI 105
Query: 679 PRGSKITD---HILIGTPGKMFD 738
+ D HI+ GTPG++FD
Sbjct: 106 GEDIRKLDYGQHIVSGTPGRVFD 128
Score = 37.5 bits (83), Expect = 0.012
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 401 GFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTA 508
GF PS IQ+ A+ +L +++IAQ+QSGTGKTA
Sbjct: 16 GFEKPSAIQQRAIKPILKG--RDVIAQAQSGTGKTA 49
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 45.2 bits (102), Expect = 6e-05
Identities = 25/52 (48%), Positives = 33/52 (63%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 505
F +L L P LL+G+ GF PS IQ A+P L ++IAQ++SGTGKT
Sbjct: 15 FHSLLLSPTLLRGLNEAGFEKPSPIQLKAIP--LGRCGLDLIAQAKSGTGKT 64
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K C F + L V + N Q++ L+PT E+A+Q +V + + K + G L
Sbjct: 63 KTCVFSVIALENVITESNCIQIIILTPTREIAVQVKDVICAIGCHYDGLACKVFIGGISL 122
Query: 679 PRGSKI--TDHILIGTPGKM 732
K + HI +GTPG++
Sbjct: 123 EEDKKALKSCHIAVGTPGRV 142
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +2
Query: 311 RKDPNSPLYSVKT--FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQS 484
+KD S+ + F LKP LL+ + GF PS++Q +P + ++I Q+
Sbjct: 34 KKDVKGTYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG--MDIICQA 91
Query: 485 QSGTGKTA 508
+SG GKTA
Sbjct: 92 KSGMGKTA 99
Score = 36.7 bits (81), Expect = 0.021
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K FVLA L +++ VL + T ELA Q + + K+ IK+ G +
Sbjct: 97 KTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGINI 156
Query: 679 PRGSKI----TDHILIGTPGKM 732
+ + HI++GTPG++
Sbjct: 157 KKDQQTLKTNCPHIVVGTPGRI 178
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +2
Query: 311 RKDPNSPLYSVKT--FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQS 484
+KD S+ + F LKP LL+ + GF PS++Q +P + ++I Q+
Sbjct: 34 KKDVKGTYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG--MDIICQA 91
Query: 485 QSGTGKTA 508
+SG GKTA
Sbjct: 92 KSGMGKTA 99
Score = 36.7 bits (81), Expect = 0.021
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K FVLA L +++ VL + T ELA Q + + K+ IK+ G +
Sbjct: 97 KTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGINI 156
Query: 679 PRGSKI----TDHILIGTPGKM 732
+ + HI++GTPG++
Sbjct: 157 KKDQQTLKTNCPHIVVGTPGRI 178
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 20/76 (26%)
Frame = +2
Query: 341 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETAL-PTLLADPP------------------ 463
V++F+ ++LK LL+G+YA GF PS IQ+ A+ P P
Sbjct: 62 VESFDDMNLKEALLRGIYAYGFEKPSAIQQRAIRPCCQEFSPSHVCYNQLNLTKNHYVLS 121
Query: 464 -QNMIAQSQSGTGKTA 508
+++IAQ+QSGTGKTA
Sbjct: 122 ARDVIAQAQSGTGKTA 137
Score = 39.1 bits (87), Expect = 0.004
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSN---KN---YPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYA 660
K +F +++L +D+N KN Q L L+PT ELA Q +V + + +K
Sbjct: 135 KTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLALGDYM-HVKCHAC 193
Query: 661 VRGEELPRGS-KITD--HILIGTPGKMFD 738
+ G + K+ + H+++GTPG++FD
Sbjct: 194 IGGTNVREDRMKLEEGVHVVVGTPGRVFD 222
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +2
Query: 266 IRQGLVESKLD-IEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALP 442
I+QG+ K D IE+ N+P+ + +FE +L L V + P+ +Q+ ++P
Sbjct: 685 IQQGINFEKYDQIEVLVSG-NNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIP 743
Query: 443 TLLADPPQNMIAQSQSGTGKTA 508
++A ++++A +Q+G+GKTA
Sbjct: 744 IVIAG--RDVMACAQTGSGKTA 763
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +1
Query: 541 SNKNYPQVLCLSPTYELAIQTGEVAAKMA--KFCPEIKLKYAVRGEELPRGSKITDHILI 714
S PQ +C++PT ELA Q A K A + V R + ++L+
Sbjct: 784 SETQTPQAMCIAPTRELANQIYLEARKFAHGTMLRPVVCYGGVSVSHQLRQLQSGCNLLV 843
Query: 715 GTPGKMFDW 741
GTPG++ D+
Sbjct: 844 GTPGRLTDF 852
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +2
Query: 266 IRQGLVESKLD-IEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALP 442
I+QG+ K D IE+ N+P+ + +FE +L L V + P+ +Q+ ++P
Sbjct: 108 IQQGINFEKYDQIEVLVSG-NNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIP 166
Query: 443 TLLADPPQNMIAQSQSGTGKT 505
++A ++++A +Q+G+GKT
Sbjct: 167 IVIAG--RDVMACAQTGSGKT 185
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 36.7 bits (81), Expect = 0.021
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +1
Query: 556 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP-RGSKITD--HILIGTPG 726
P LC++PT ELA Q A K + P IK+ G +P + S++ H L+GTPG
Sbjct: 553 PLALCVAPTRELAKQIYIEARKFSDHTP-IKVCVCYGGVSVPYQASQLERGCHFLVGTPG 611
Query: 727 KMFDW 741
++ D+
Sbjct: 612 RLQDF 616
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 36.3 bits (80), Expect = 0.028
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 556 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD-----HILIGT 720
P VL L PT ELA Q EVA + K C KL+ P+G +I + I I T
Sbjct: 133 PIVLVLCPTRELAQQVQEVAYSVGKHC---KLRSTCIYGGAPKGPQIRELERGVEICIAT 189
Query: 721 PGKMFD 738
PG++ D
Sbjct: 190 PGRLID 195
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 35.5 bits (78), Expect = 0.049
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = +2
Query: 350 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 505
F + P L++ + MG P IQE ALP++ + ++++ +S++GTGK+
Sbjct: 162 FSNFGVHPKLVEKLKKMGITKPVPIQEKALPSVFSH--KSLLIKSETGTGKS 211
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 34.7 bits (76), Expect = 0.086
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 556 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD---HILIGTPG 726
PQ L LSPT ELA Q +V + + ++ + G + + D HI+ GTPG
Sbjct: 4 PQALVLSPTRELANQIQKVVLALGDYM-SVQCHACIGGTNIGEDIRKLDYGQHIVSGTPG 62
Query: 727 KMF 735
++F
Sbjct: 63 RVF 65
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 34.7 bits (76), Expect = 0.086
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Frame = +1
Query: 544 NKNYPQV-LCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI---TDHIL 711
++ YP + L ++PT ELA+Q + K AK+ +K+ V G P+ ++ I+
Sbjct: 214 SQGYPLLALIMAPTRELALQVKDHLVKAAKY-TSVKVAAIVGGMAAPKQQRLLKQRPEIV 272
Query: 712 IGTPGKMFD 738
+ TPG++++
Sbjct: 273 VATPGRLWE 281
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 33.1 bits (72), Expect = 0.26
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNK------NYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYA 660
K SF L ++ ++ K P+VL ++PT ELA Q G + K E+ Y
Sbjct: 123 KTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELAKQVGNEFENL-KSNLEVYCIYG 181
Query: 661 VRGEELPRGSKITD--HILIGTPGKMFDW 741
E P+ + I +L+GTPG++ D+
Sbjct: 182 GMPYE-PQENAINSGLDVLVGTPGRILDF 209
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 31.5 bits (68), Expect = 0.80
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 678
K +F L +L + N L L+PT ELA Q E + +K V G ++
Sbjct: 14 KTGAFALPILQALLDNPQRLFALILTPTRELAFQISEQCEALGSGI-GVKCAVIVGGIDM 72
Query: 679 PRGSKI---TDHILIGTPGKMFD 738
+ + HI+I TPG++ D
Sbjct: 73 MSQALMLAKKPHIIIATPGRLID 95
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +1
Query: 547 KNYPQVLCLSPTYELAIQTGEVAAKMAK---FCPEIKLKYAVRGEELPRGSKITDHILIG 717
+N V+ +SPT EL++QT VA + K F I + R E R K ++LI
Sbjct: 642 RNGTGVIIISPTRELSLQTYGVARDLLKHHNFTYGIIMGGVNRKAEAERLQKGV-NLLIA 700
Query: 718 TPGKMFD 738
TPG++ D
Sbjct: 701 TPGRLLD 707
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 565 LCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSK--ITDHILIGTPGKM 732
L +SPT ELA QT EV K+ ++ + G++L K + +I++ TPG++
Sbjct: 126 LVISPTRELAYQTFEVLVKIGN-KHDLSAGLIIGGKDLKNEQKRIMKTNIVVCTPGRL 182
>SB_24445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 517 LAMLSRVDSNKNYPQVLCLSPTYELAI 597
+A LS+VDSNK YP ++ + P +AI
Sbjct: 250 IAFLSQVDSNKPYPALVSIVPCCTVAI 276
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 499 KNCSFVLAMLSRVDSN--KNYPQVLCLSPTYELAIQTGEVAAKMAKF 633
K +F++ M ++ ++ K + L LSPT ELA+QT + ++ +F
Sbjct: 331 KTAAFLIPMFEKLQTHTAKVGIRALILSPTRELALQTQKFIKELGRF 377
>SB_54337| Best HMM Match : Ank (HMM E-Value=0.0052)
Length = 511
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +2
Query: 287 SKLDIEIQRKDPNSPLYSVKTFEALH--LKPNLLKGVYAMGFNAPSKIQETA--LPTLLA 454
S + + + PN Y + F A L ++L+ + P ++ E + L
Sbjct: 363 SSMKLFVPPASPNDQEYHILKFYAFSSALVNSVLQMAITGRMDFPFRVTELEHRIINLRP 422
Query: 455 DPPQNMIAQSQSGTGKT 505
+PP+++I +SGTGKT
Sbjct: 423 NPPRSVILLGRSGTGKT 439
>SB_33822| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0022)
Length = 229
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 562 VLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD 702
V+ L+ TY L+I+ + +KFC E Y + E+ K TD
Sbjct: 47 VVFLAETYNLSIEKDDQTIHPSKFCRECFRSYRIHTREVGFLEKHTD 93
>SB_26235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 406
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 562 VLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD 702
V+ L+ TY L+I+ + +KFC E Y + E+ K TD
Sbjct: 47 VVFLAETYNLSIEKDDQTIHPSKFCRECFRSYRIHTREVGFLEKHTD 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,598,677
Number of Sequences: 59808
Number of extensions: 473095
Number of successful extensions: 974
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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