Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1250
(774 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 170 8e-43
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 169 2e-42
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 168 4e-42
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 166 1e-41
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 166 2e-41
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 164 5e-41
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 164 7e-41
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 162 3e-40
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 162 3e-40
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 99 3e-21
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 99 3e-21
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 98 5e-21
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 98 5e-21
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 98 5e-21
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 98 5e-21
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 97 1e-20
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 73 2e-13
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 72 4e-13
At4g37190.1 68417.m05265 expressed protein 31 0.85
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 30 1.5
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 30 2.0
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 29 2.6
At3g07470.1 68416.m00891 expressed protein contains Pfam profile... 28 7.9
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 170 bits (414), Expect = 8e-43
Identities = 72/83 (86%), Positives = 80/83 (96%)
Frame = +3
Query: 261 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 440
SGG+YVPRA+L+DLEPGTMD++RSG YGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 56 SGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID 115
Query: 441 AVLDVVRKECENCDCLQGFQLTH 509
AVLDVVRKE ENCDCLQGFQ+ H
Sbjct: 116 AVLDVVRKEAENCDCLQGFQVCH 138
Score = 99.1 bits (236), Expect = 3e-21
Identities = 43/56 (76%), Positives = 50/56 (89%), Gaps = 1/56 (1%)
Frame = +1
Query: 82 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTS-DLQLERISVYYNEAS 246
MREI+H+Q GQCGNQIG+KFWE+I +EHG+DPTG Y G S DLQLERI+VYYNEAS
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEAS 56
Score = 96.3 bits (229), Expect = 2e-20
Identities = 49/75 (65%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Frame = +2
Query: 551 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA-FTIS 727
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEA + I
Sbjct: 153 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 212
Query: 728 ATGLSRYRTNVRDLN 772
L + DLN
Sbjct: 213 FRTLKLSTPSFGDLN 227
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 169 bits (410), Expect = 2e-42
Identities = 71/83 (85%), Positives = 80/83 (96%)
Frame = +3
Query: 261 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 440
SGG+YVPRA+L+DLEPGTMD++RSG +GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 56 SGGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID 115
Query: 441 AVLDVVRKECENCDCLQGFQLTH 509
AVLDVVRKE ENCDCLQGFQ+ H
Sbjct: 116 AVLDVVRKEAENCDCLQGFQVCH 138
Score = 97.5 bits (232), Expect = 9e-21
Identities = 43/56 (76%), Positives = 50/56 (89%), Gaps = 1/56 (1%)
Frame = +1
Query: 82 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRG-TSDLQLERISVYYNEAS 246
MREI+H+Q GQCGNQIG+KFWE+I +EHGID TG Y G T+DLQLERI+VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEAS 56
Score = 96.3 bits (229), Expect = 2e-20
Identities = 49/75 (65%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Frame = +2
Query: 551 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA-FTIS 727
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEA + I
Sbjct: 153 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 212
Query: 728 ATGLSRYRTNVRDLN 772
L + DLN
Sbjct: 213 FRTLKLSTPSFGDLN 227
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 168 bits (408), Expect = 4e-42
Identities = 71/83 (85%), Positives = 80/83 (96%)
Frame = +3
Query: 261 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 440
SGGKYVPRA+L+DLEPGTMD++RSG +GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 55 SGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID 114
Query: 441 AVLDVVRKECENCDCLQGFQLTH 509
+VLDVVRKE ENCDCLQGFQ+ H
Sbjct: 115 SVLDVVRKEAENCDCLQGFQVCH 137
Score = 96.7 bits (230), Expect = 2e-20
Identities = 49/75 (65%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Frame = +2
Query: 551 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA-FTIS 727
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEA + I
Sbjct: 152 ISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 728 ATGLSRYRTNVRDLN 772
L DLN
Sbjct: 212 FRTLKLANPTFGDLN 226
Score = 93.5 bits (222), Expect = 1e-19
Identities = 41/55 (74%), Positives = 47/55 (85%)
Frame = +1
Query: 82 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEAS 246
MREI+H+Q GQCGNQIGAKFWE+I EHGID TG G +DLQLERI+VY+NEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEAS 55
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 166 bits (404), Expect = 1e-41
Identities = 72/83 (86%), Positives = 79/83 (95%)
Frame = +3
Query: 261 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 440
S G+YVPRAIL+DLEPGTMD+VR+G YGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 55 SCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID 114
Query: 441 AVLDVVRKECENCDCLQGFQLTH 509
AVLDVVRKE ENCDCLQGFQ+ H
Sbjct: 115 AVLDVVRKEAENCDCLQGFQVCH 137
Score = 102 bits (245), Expect = 2e-22
Identities = 42/55 (76%), Positives = 50/55 (90%)
Frame = +1
Query: 82 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEAS 246
MREI+H+Q GQCGNQIG+KFWE++ +EHGIDPTG Y G SDLQLER++VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEAS 55
Score = 96.3 bits (229), Expect = 2e-20
Identities = 49/75 (65%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Frame = +2
Query: 551 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA-FTIS 727
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEA + I
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 728 ATGLSRYRTNVRDLN 772
L + DLN
Sbjct: 212 FRTLKLTTPSFGDLN 226
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 166 bits (403), Expect = 2e-41
Identities = 71/83 (85%), Positives = 79/83 (95%)
Frame = +3
Query: 261 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 440
S G+YVPRA+L+DLEPGTMD+VRSG YGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 55 SCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID 114
Query: 441 AVLDVVRKECENCDCLQGFQLTH 509
+VLDVVRKE ENCDCLQGFQ+ H
Sbjct: 115 SVLDVVRKEAENCDCLQGFQVCH 137
Score = 96.7 bits (230), Expect = 2e-20
Identities = 49/75 (65%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Frame = +2
Query: 551 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA-FTIS 727
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEA + I
Sbjct: 152 ISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 728 ATGLSRYRTNVRDLN 772
L + DLN
Sbjct: 212 FRTLKLSTPSFGDLN 226
Score = 96.3 bits (229), Expect = 2e-20
Identities = 40/55 (72%), Positives = 49/55 (89%)
Frame = +1
Query: 82 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEAS 246
MREI+H+Q GQCGNQIG+KFWE+++ EHGID TG Y G S+LQLER++VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEAS 55
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 164 bits (399), Expect = 5e-41
Identities = 70/83 (84%), Positives = 79/83 (95%)
Frame = +3
Query: 261 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 440
S G++VPRA+L+DLEPGTMD+VRSG YGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 55 SCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID 114
Query: 441 AVLDVVRKECENCDCLQGFQLTH 509
+VLDVVRKE ENCDCLQGFQ+ H
Sbjct: 115 SVLDVVRKEAENCDCLQGFQVCH 137
Score = 99.5 bits (237), Expect = 2e-21
Identities = 41/55 (74%), Positives = 49/55 (89%)
Frame = +1
Query: 82 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEAS 246
MREI+H+Q GQCGNQIGAKFWE++ EHGID TG Y+G +DLQLER++VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEAS 55
Score = 96.3 bits (229), Expect = 2e-20
Identities = 49/75 (65%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Frame = +2
Query: 551 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA-FTIS 727
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEA + I
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 728 ATGLSRYRTNVRDLN 772
L + DLN
Sbjct: 212 FRTLKLTTPSFGDLN 226
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 164 bits (398), Expect = 7e-41
Identities = 70/83 (84%), Positives = 79/83 (95%)
Frame = +3
Query: 261 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 440
SGGKYVPRA+L+DLEPGTMD++RSG +GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 55 SGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID 114
Query: 441 AVLDVVRKECENCDCLQGFQLTH 509
+VLDVVRKE EN DCLQGFQ+ H
Sbjct: 115 SVLDVVRKEAENSDCLQGFQVCH 137
Score = 96.7 bits (230), Expect = 2e-20
Identities = 49/75 (65%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Frame = +2
Query: 551 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA-FTIS 727
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEA + I
Sbjct: 152 ISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 728 ATGLSRYRTNVRDLN 772
L DLN
Sbjct: 212 FRTLKLANPTFGDLN 226
Score = 96.3 bits (229), Expect = 2e-20
Identities = 42/55 (76%), Positives = 47/55 (85%)
Frame = +1
Query: 82 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEAS 246
MREI+H+Q GQCGNQIGAKFWE+I +EHGID TG Y G S LQLERI VY+NEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEAS 55
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 162 bits (393), Expect = 3e-40
Identities = 69/83 (83%), Positives = 78/83 (93%)
Frame = +3
Query: 261 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 440
S G++VPRA+L+DLEPGTMD++RSG YGQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 55 SCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELID 114
Query: 441 AVLDVVRKECENCDCLQGFQLTH 509
+VLDVVRKE ENCDCLQGFQ+ H
Sbjct: 115 SVLDVVRKEAENCDCLQGFQVCH 137
Score = 103 bits (247), Expect = 1e-22
Identities = 44/55 (80%), Positives = 49/55 (89%)
Frame = +1
Query: 82 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEAS 246
MREI+H+Q GQCGNQIGAKFWE++ EHGIDPTG Y G SDLQLERI+VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEAS 55
Score = 96.3 bits (229), Expect = 2e-20
Identities = 49/75 (65%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Frame = +2
Query: 551 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA-FTIS 727
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEA + I
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 728 ATGLSRYRTNVRDLN 772
L + DLN
Sbjct: 212 FRTLKLTTPSFGDLN 226
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 162 bits (393), Expect = 3e-40
Identities = 69/83 (83%), Positives = 78/83 (93%)
Frame = +3
Query: 261 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 440
S G++VPRA+L+DLEPGTMD++RSG YGQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 55 SCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELID 114
Query: 441 AVLDVVRKECENCDCLQGFQLTH 509
+VLDVVRKE ENCDCLQGFQ+ H
Sbjct: 115 SVLDVVRKEAENCDCLQGFQVCH 137
Score = 103 bits (247), Expect = 1e-22
Identities = 44/55 (80%), Positives = 49/55 (89%)
Frame = +1
Query: 82 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEAS 246
MREI+H+Q GQCGNQIGAKFWE++ EHGIDPTG Y G SDLQLERI+VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEAS 55
Score = 96.3 bits (229), Expect = 2e-20
Identities = 49/75 (65%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Frame = +2
Query: 551 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA-FTIS 727
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE +DNEA + I
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 728 ATGLSRYRTNVRDLN 772
L + DLN
Sbjct: 212 FRTLKLTTPSFGDLN 226
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 99.1 bits (236), Expect = 3e-21
Identities = 45/82 (54%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 431
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKE 113
Query: 432 LVDAVLDVVRKECENCDCLQGF 497
+VD LD VRK +NC LQGF
Sbjct: 114 IVDLCLDRVRKLADNCTGLQGF 135
Score = 57.6 bits (133), Expect = 9e-09
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +2
Query: 551 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA-FTIS 727
+ ++ +Y + +++ PSP+VS VVEPYN+VLS H L+E+TD +DNEA + I
Sbjct: 154 LERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDIC 213
Query: 728 ATGLSRYRTNVRDLN 772
L R +LN
Sbjct: 214 RRSLDIERPTYTNLN 228
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 82 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGV 186
MREI+ + GQ G Q+G WE+ EHGI P G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGM 35
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 99.1 bits (236), Expect = 3e-21
Identities = 45/82 (54%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 431
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKE 113
Query: 432 LVDAVLDVVRKECENCDCLQGF 497
+VD LD VRK +NC LQGF
Sbjct: 114 IVDLCLDRVRKLADNCTGLQGF 135
Score = 57.6 bits (133), Expect = 9e-09
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +2
Query: 551 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA-FTIS 727
+ ++ +Y + +++ PSP+VS VVEPYN+VLS H L+E+TD +DNEA + I
Sbjct: 154 LERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDIC 213
Query: 728 ATGLSRYRTNVRDLN 772
L R +LN
Sbjct: 214 RRSLDIERPTYTNLN 228
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 82 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGV 186
MREI+ + GQ G Q+G WE+ EHGI P G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGM 35
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 98.3 bits (234), Expect = 5e-21
Identities = 44/82 (53%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 431
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKE 113
Query: 432 LVDAVLDVVRKECENCDCLQGF 497
+VD LD +RK +NC LQGF
Sbjct: 114 IVDLCLDRIRKLADNCTGLQGF 135
Score = 59.3 bits (137), Expect = 3e-09
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = +2
Query: 551 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA-FTIS 727
+ ++ +Y + ++V PSP+VS +VVEPYN+VLS H L+E+TD + +DNEA + I
Sbjct: 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
Query: 728 ATGLSRYRTNVRDLN 772
L+ R +LN
Sbjct: 214 RRSLNIERPTYTNLN 228
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 82 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRG 195
MRE + + GQ G Q+G WE+ EHGI P G G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPG 38
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 98.3 bits (234), Expect = 5e-21
Identities = 44/82 (53%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 431
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKE 113
Query: 432 LVDAVLDVVRKECENCDCLQGF 497
+VD LD +RK +NC LQGF
Sbjct: 114 IVDLCLDRIRKLADNCTGLQGF 135
Score = 59.3 bits (137), Expect = 3e-09
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = +2
Query: 551 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA-FTIS 727
+ ++ +Y + ++V PSP+VS +VVEPYN+VLS H L+E+TD + +DNEA + I
Sbjct: 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
Query: 728 ATGLSRYRTNVRDLN 772
L+ R +LN
Sbjct: 214 RRSLNIERPTYTNLN 228
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 82 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRG 195
MRE + + GQ G Q+G WE+ EHGI P G G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPG 38
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 98.3 bits (234), Expect = 5e-21
Identities = 44/82 (53%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 431
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKE 113
Query: 432 LVDAVLDVVRKECENCDCLQGF 497
+VD LD +RK +NC LQGF
Sbjct: 114 IVDLCLDRIRKLADNCTGLQGF 135
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = +2
Query: 551 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA-FTIS 727
+ ++ +Y + ++V PSP+VS +VVEPYN+VLS H L+E+TD + +DNEA + I
Sbjct: 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
Query: 728 ATGLSRYRTNVRDLN 772
LS R +LN
Sbjct: 214 RRSLSIERPTYTNLN 228
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 82 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 183
MRE + + GQ G Q+G WE+ EHGI P G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDG 34
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 98.3 bits (234), Expect = 5e-21
Identities = 44/82 (53%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 431
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKE 113
Query: 432 LVDAVLDVVRKECENCDCLQGF 497
+VD LD +RK +NC LQGF
Sbjct: 114 IVDLCLDRIRKLADNCTGLQGF 135
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = +2
Query: 551 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA-FTIS 727
+ ++ +Y + ++V PSP+VS +VVEPYN+VLS H L+E+TD + +DNEA + I
Sbjct: 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
Query: 728 ATGLSRYRTNVRDLN 772
LS R +LN
Sbjct: 214 RRSLSIERPTYTNLN 228
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 82 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 183
MRE + + GQ G Q+G WE+ EHGI P G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDG 34
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 97.1 bits (231), Expect = 1e-20
Identities = 42/79 (53%), Positives = 56/79 (70%)
Frame = +3
Query: 261 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 440
S G++VPRA+ LDLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+VD
Sbjct: 57 SSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVD 116
Query: 441 AVLDVVRKECENCDCLQGF 497
L+ +RK +NC LQGF
Sbjct: 117 TCLERLRKLADNCTGLQGF 135
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +2
Query: 596 YSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA-FTISATGLSRYRTNVRDLN 772
+++ PSP+VS VVEPYN+VLS H L+E+TD +DNEA + I L R +LN
Sbjct: 169 FTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYSNLN 228
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 82 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQL--ERISVYYNEAS 246
MREI+ + GQ G Q+G WE+ EHGI P G S + + + +++E S
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETS 57
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 72.9 bits (171), Expect = 2e-13
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +3
Query: 273 YVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAV 446
Y+PRA+L+DLEP ++ +++G Y L+ +N GAGNNWA G Y +G + + +
Sbjct: 60 YIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEI 118
Query: 447 LDVVRKECENCDCLQGFQLTH 509
+D++ +E + D L+GF L H
Sbjct: 119 MDMIDREADGSDSLEGFVLCH 139
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +1
Query: 85 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA 243
REI+ LQ GQCGNQIG +FW+ + EHGI G+ + +R V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQA 55
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +2
Query: 551 ISKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA 715
+ + + Y +++ TYSV P+ + SD VV+PYN++L++ +L N D +DN A
Sbjct: 154 LETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTA 209
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 72.1 bits (169), Expect = 4e-13
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +3
Query: 273 YVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDAV 446
Y+PRA+L+DLEP ++ +++G Y L+ +N GAGNNWA G Y +G + + +
Sbjct: 60 YIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEI 118
Query: 447 LDVVRKECENCDCLQGFQLTH 509
+D++ +E + D L+GF L H
Sbjct: 119 MDMIDREADGSDSLEGFVLCH 139
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +1
Query: 85 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA 243
REI+ LQ GQCGNQIG +FW+ + EHGI G+ + +R V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQA 55
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +2
Query: 551 ISKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNAVLSIHQLVENTDETYCIDNEA 715
+ + + Y +++ TYSV P+ + SD VV+PYN++L++ +L N D +DN A
Sbjct: 154 LETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTA 209
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 31.1 bits (67), Expect = 0.85
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 82 MREIVHLQAGQCGNQIGAKFWEIISEEHGI 171
MREIV +Q G+ N +G+ FW E G+
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGL 30
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +3
Query: 453 VVRKECENCDCLQGF 497
VVRKE ENC+CLQ F
Sbjct: 7 VVRKEAENCNCLQVF 21
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 73 VVTMREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRG 195
V+ + + QA G IG ++W IIS++ G D T YRG
Sbjct: 668 VLNLESMGRGQAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 79 TMREIVHLQAGQCGNQIGAKFWEIISE 159
T +I++ A + G+ GA FWE+ISE
Sbjct: 343 TTYDIIYASAQKGGSAAGALFWEVISE 369
>At3g07470.1 68416.m00891 expressed protein contains Pfam profile
PF04398: Protein of unknown function, DUF538
Length = 169
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 166 GIDPTGVYRGTSDLQLERISVYYNEASVA 252
GI P GV T D++ R SVY N+A A
Sbjct: 43 GIFPKGVREFTFDVETGRFSVYLNQACEA 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,787,678
Number of Sequences: 28952
Number of extensions: 255904
Number of successful extensions: 834
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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