Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0022
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 4e-18
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 55 6e-08
SB_46912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_38231| Best HMM Match : Yippee (HMM E-Value=4) 29 4.3
SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_57776| Best HMM Match : EB (HMM E-Value=2.9) 28 7.5
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_5463| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 88.6 bits (210), Expect = 4e-18
Identities = 55/139 (39%), Positives = 74/139 (53%), Gaps = 3/139 (2%)
Frame = +2
Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 421
L + +RWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ + LFK+L KYRPET
Sbjct: 51 LSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEK 110
Query: 422 XXXXXXXXXXXXXXXDE-PHQRGPTPSDPAKH--SHQAGREEEGAACGHRS*C*SY*AGS 592
+E P ++ H S ++ + H
Sbjct: 111 KARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPIEI-VVW 169
Query: 593 LPAALCRKMGVPYCIVKGQ 649
LP ALCRKM VPYCIVKG+
Sbjct: 170 LP-ALCRKMQVPYCIVKGK 187
Score = 72.1 bits (169), Expect = 4e-13
Identities = 54/159 (33%), Positives = 70/159 (44%), Gaps = 2/159 (1%)
Frame = +3
Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF*DGPS-ISASSARRLYFSVV*KCPLRSTNLPRHW 353
NPL EKRP+NF IG IQP RDLSRF P + + L + + K P +
Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRL-KVPPAINQFTQAL 87
Query: 354 TRLQ-LRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLTKEAQHHPIRQNTVTKLV 530
R ++ F + + K+ N +T LV
Sbjct: 88 DRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLV 147
Query: 531 EKKKAQLVVIAHDVDPIELVLFLPRYAVKWVYHTALSKG 647
E KKAQLVVIAHDVDPIE+V++LP K + KG
Sbjct: 148 ENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKG 186
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 54.8 bits (126), Expect = 6e-08
Identities = 27/46 (58%), Positives = 32/46 (69%)
Frame = +3
Query: 510 NTVTKLVEKKKAQLVVIAHDVDPIELVLFLPRYAVKWVYHTALSKG 647
N +T LVE KKAQLVVIAHDVDPIE+V++LP K + KG
Sbjct: 50 NHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKG 95
Score = 35.1 bits (77), Expect = 0.050
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 602 ALCRKMGVPYCIVKGQ 649
ALCRKM VPYCIVKG+
Sbjct: 81 ALCRKMQVPYCIVKGK 96
>SB_46912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 218 SGHSANS*LVQILRWPKYIRIQRQKAVL 301
SGH+ N L Q ++W KYI ++ K L
Sbjct: 4 SGHAQNQRLSQSIQWNKYINCKKNKTNL 31
>SB_38231| Best HMM Match : Yippee (HMM E-Value=4)
Length = 230
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 218 SGHSANS*LVQILRWPKYIRIQRQKAVL 301
SGH+ N L Q ++W KYI ++ K L
Sbjct: 4 SGHAQNQRLSQSIQWNKYINCKKNKTNL 31
>SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 218 SGHSANS*LVQILRWPKYIRIQRQKAVL 301
SGH+ N L Q ++W KYI ++ K L
Sbjct: 546 SGHAQNQRLSQSIQWNKYINCKKNKTNL 573
>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
Length = 669
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 170 DRESSLREEAKELCYWSGH 226
DR ++ E KE+CYW GH
Sbjct: 187 DRRKNMEERHKEMCYW-GH 204
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 298 TSASSESAPSDQPIYPDTG 354
T+ASSE+APS P PD G
Sbjct: 43 TAASSEAAPSSAPSMPDYG 61
>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 170 DRESSLREEAKELCYWSGH 226
DR ++ E KE+CYW GH
Sbjct: 137 DRRKNMEERHKEMCYW-GH 154
>SB_5463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/49 (20%), Positives = 19/49 (38%)
Frame = +1
Query: 211 LLVRAFSQLVTCPDFKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTGQ 357
+++ F C F Q PH + CT + + ++ +GQ
Sbjct: 266 IMITLFEVFTACKCFGFGQELPHEHKQECTDGKKKRVKKGETLHSTSGQ 314
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,736,743
Number of Sequences: 59808
Number of extensions: 314187
Number of successful extensions: 1251
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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