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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0022
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   4e-18
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        55   6e-08
SB_46912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_38231| Best HMM Match : Yippee (HMM E-Value=4)                      29   4.3  
SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_57776| Best HMM Match : EB (HMM E-Value=2.9)                        28   7.5  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_5463| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 55/139 (39%), Positives = 74/139 (53%), Gaps = 3/139 (2%)
 Frame = +2

Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 421
           L + +RWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ +   LFK+L KYRPET    
Sbjct: 51  LSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEK 110

Query: 422 XXXXXXXXXXXXXXXDE-PHQRGPTPSDPAKH--SHQAGREEEGAACGHRS*C*SY*AGS 592
                          +E P ++         H  S    ++ +     H           
Sbjct: 111 KARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPIEI-VVW 169

Query: 593 LPAALCRKMGVPYCIVKGQ 649
           LP ALCRKM VPYCIVKG+
Sbjct: 170 LP-ALCRKMQVPYCIVKGK 187



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 54/159 (33%), Positives = 70/159 (44%), Gaps = 2/159 (1%)
 Frame = +3

Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF*DGPS-ISASSARRLYFSVV*KCPLRSTNLPRHW 353
           NPL EKRP+NF IG  IQP RDLSRF   P  +     + L +  + K P       +  
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRL-KVPPAINQFTQAL 87

Query: 354 TRLQ-LRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLTKEAQHHPIRQNTVTKLV 530
            R   ++ F    +                          +  K+        N +T LV
Sbjct: 88  DRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLV 147

Query: 531 EKKKAQLVVIAHDVDPIELVLFLPRYAVKWVYHTALSKG 647
           E KKAQLVVIAHDVDPIE+V++LP    K      + KG
Sbjct: 148 ENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKG 186


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 27/46 (58%), Positives = 32/46 (69%)
 Frame = +3

Query: 510 NTVTKLVEKKKAQLVVIAHDVDPIELVLFLPRYAVKWVYHTALSKG 647
           N +T LVE KKAQLVVIAHDVDPIE+V++LP    K      + KG
Sbjct: 50  NHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKG 95



 Score = 35.1 bits (77), Expect = 0.050
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 602 ALCRKMGVPYCIVKGQ 649
           ALCRKM VPYCIVKG+
Sbjct: 81  ALCRKMQVPYCIVKGK 96


>SB_46912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 218 SGHSANS*LVQILRWPKYIRIQRQKAVL 301
           SGH+ N  L Q ++W KYI  ++ K  L
Sbjct: 4   SGHAQNQRLSQSIQWNKYINCKKNKTNL 31


>SB_38231| Best HMM Match : Yippee (HMM E-Value=4)
          Length = 230

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 218 SGHSANS*LVQILRWPKYIRIQRQKAVL 301
           SGH+ N  L Q ++W KYI  ++ K  L
Sbjct: 4   SGHAQNQRLSQSIQWNKYINCKKNKTNL 31


>SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 218 SGHSANS*LVQILRWPKYIRIQRQKAVL 301
           SGH+ N  L Q ++W KYI  ++ K  L
Sbjct: 546 SGHAQNQRLSQSIQWNKYINCKKNKTNL 573


>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
          Length = 669

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 170 DRESSLREEAKELCYWSGH 226
           DR  ++ E  KE+CYW GH
Sbjct: 187 DRRKNMEERHKEMCYW-GH 204


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 298 TSASSESAPSDQPIYPDTG 354
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 170 DRESSLREEAKELCYWSGH 226
           DR  ++ E  KE+CYW GH
Sbjct: 137 DRRKNMEERHKEMCYW-GH 154


>SB_5463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/49 (20%), Positives = 19/49 (38%)
 Frame = +1

Query: 211 LLVRAFSQLVTCPDFKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTGQ 357
           +++  F     C  F   Q  PH   + CT    +     + ++  +GQ
Sbjct: 266 IMITLFEVFTACKCFGFGQELPHEHKQECTDGKKKRVKKGETLHSTSGQ 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,736,743
Number of Sequences: 59808
Number of extensions: 314187
Number of successful extensions: 1251
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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