BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--0022 (649 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 4e-18 SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 55 6e-08 SB_46912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3 SB_38231| Best HMM Match : Yippee (HMM E-Value=4) 29 4.3 SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3 SB_57776| Best HMM Match : EB (HMM E-Value=2.9) 28 7.5 SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5 SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5 SB_5463| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9 >SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 263 Score = 88.6 bits (210), Expect = 4e-18 Identities = 55/139 (39%), Positives = 74/139 (53%), Gaps = 3/139 (2%) Frame = +2 Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 421 L + +RWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ + LFK+L KYRPET Sbjct: 51 LSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEK 110 Query: 422 XXXXXXXXXXXXXXXDE-PHQRGPTPSDPAKH--SHQAGREEEGAACGHRS*C*SY*AGS 592 +E P ++ H S ++ + H Sbjct: 111 KARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPIEI-VVW 169 Query: 593 LPAALCRKMGVPYCIVKGQ 649 LP ALCRKM VPYCIVKG+ Sbjct: 170 LP-ALCRKMQVPYCIVKGK 187 Score = 72.1 bits (169), Expect = 4e-13 Identities = 54/159 (33%), Positives = 70/159 (44%), Gaps = 2/159 (1%) Frame = +3 Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF*DGPS-ISASSARRLYFSVV*KCPLRSTNLPRHW 353 NPL EKRP+NF IG IQP RDLSRF P + + L + + K P + Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRL-KVPPAINQFTQAL 87 Query: 354 TRLQ-LRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLTKEAQHHPIRQNTVTKLV 530 R ++ F + + K+ N +T LV Sbjct: 88 DRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLV 147 Query: 531 EKKKAQLVVIAHDVDPIELVLFLPRYAVKWVYHTALSKG 647 E KKAQLVVIAHDVDPIE+V++LP K + KG Sbjct: 148 ENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKG 186 >SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) Length = 172 Score = 54.8 bits (126), Expect = 6e-08 Identities = 27/46 (58%), Positives = 32/46 (69%) Frame = +3 Query: 510 NTVTKLVEKKKAQLVVIAHDVDPIELVLFLPRYAVKWVYHTALSKG 647 N +T LVE KKAQLVVIAHDVDPIE+V++LP K + KG Sbjct: 50 NHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKG 95 Score = 35.1 bits (77), Expect = 0.050 Identities = 14/16 (87%), Positives = 15/16 (93%) Frame = +2 Query: 602 ALCRKMGVPYCIVKGQ 649 ALCRKM VPYCIVKG+ Sbjct: 81 ALCRKMQVPYCIVKGK 96 >SB_46912| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 63 Score = 28.7 bits (61), Expect = 4.3 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +2 Query: 218 SGHSANS*LVQILRWPKYIRIQRQKAVL 301 SGH+ N L Q ++W KYI ++ K L Sbjct: 4 SGHAQNQRLSQSIQWNKYINCKKNKTNL 31 >SB_38231| Best HMM Match : Yippee (HMM E-Value=4) Length = 230 Score = 28.7 bits (61), Expect = 4.3 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +2 Query: 218 SGHSANS*LVQILRWPKYIRIQRQKAVL 301 SGH+ N L Q ++W KYI ++ K L Sbjct: 4 SGHAQNQRLSQSIQWNKYINCKKNKTNL 31 >SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 831 Score = 28.7 bits (61), Expect = 4.3 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +2 Query: 218 SGHSANS*LVQILRWPKYIRIQRQKAVL 301 SGH+ N L Q ++W KYI ++ K L Sbjct: 546 SGHAQNQRLSQSIQWNKYINCKKNKTNL 573 >SB_57776| Best HMM Match : EB (HMM E-Value=2.9) Length = 669 Score = 27.9 bits (59), Expect = 7.5 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +2 Query: 170 DRESSLREEAKELCYWSGH 226 DR ++ E KE+CYW GH Sbjct: 187 DRRKNMEERHKEMCYW-GH 204 >SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 655 Score = 27.9 bits (59), Expect = 7.5 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = +1 Query: 298 TSASSESAPSDQPIYPDTG 354 T+ASSE+APS P PD G Sbjct: 43 TAASSEAAPSSAPSMPDYG 61 >SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 227 Score = 27.9 bits (59), Expect = 7.5 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +2 Query: 170 DRESSLREEAKELCYWSGH 226 DR ++ E KE+CYW GH Sbjct: 137 DRRKNMEERHKEMCYW-GH 154 >SB_5463| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 316 Score = 27.5 bits (58), Expect = 9.9 Identities = 10/49 (20%), Positives = 19/49 (38%) Frame = +1 Query: 211 LLVRAFSQLVTCPDFKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTGQ 357 +++ F C F Q PH + CT + + ++ +GQ Sbjct: 266 IMITLFEVFTACKCFGFGQELPHEHKQECTDGKKKRVKKGETLHSTSGQ 314 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,736,743 Number of Sequences: 59808 Number of extensions: 314187 Number of successful extensions: 1251 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1209 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1251 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1645141000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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