Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0011
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25295| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   8e-05
SB_45623| Best HMM Match : BTB (HMM E-Value=1.4e-36)                   31   1.1  
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_34949| Best HMM Match : ANF_receptor (HMM E-Value=0)                28   5.9  
SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2)                   28   7.9  

>SB_25295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
 Frame = +1

Query: 76  KGRAPIRRTLNYLNAGKLVLKDKIKVFSVAYNITGQN--NVGTKEFCFWYLPQIQYKNPD 249
           +GR  + RTL++L    + L D +   S+  N+ G+   N G K F +  +PQ++YKNP 
Sbjct: 25  EGRFAVNRTLDHLKRCNVNLPDNVN--SITLNLAGKEKANHGAKRFLYENVPQLKYKNPH 82

Query: 250 VQ 255
           VQ
Sbjct: 83  VQ 84


>SB_45623| Best HMM Match : BTB (HMM E-Value=1.4e-36)
          Length = 574

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +3

Query: 195 NKRVLLLVSTANTIQKSRRTIVTLKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILE 365
           N    + + T + I+K +  ++ LK L PS  +K  LD      I++DNK+  D+LE
Sbjct: 62  NSHYFMAMFTTDMIEKEQERVI-LKKLKPS-VVKEILDFLYTGRIEIDNKNVRDLLE 116


>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2671

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 581 GQLILFNQFDSYIFLS*ISVMAQHRAGHLPENFTHARSI 465
           G +I    F  ++F+S + ++   +A  LP+NF  AR I
Sbjct: 727 GLIIRAVMFGYFVFMSLLCILYAFKARKLPDNFNEARYI 765


>SB_34949| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 879

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 557 FDSYIFLS*ISVMAQHRAGHLPENFTHARSI 465
           F  +IFLS +S +   +A  LP+NF  AR I
Sbjct: 731 FVYFIFLSLVSSVYAFKARRLPDNFNEARFI 761


>SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 827

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 581 GQLILFNQFDSYIFLS*ISVMAQHRAGHLPENFTHARSI 465
           G +I    F  +IF+S +  +   +A  LP+NF  AR I
Sbjct: 698 GLIIRAVMFSYFIFMSLLCTLYAFKARKLPDNFNEARYI 736


>SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2)
          Length = 918

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 256 IVRLDFCIVFAVDTKSRTLLFLHYFGLLCC 167
           +  +D C+   V  KSR + +++Y  LL C
Sbjct: 488 VAEIDACVCLRVGQKSRLIFWINYITLLGC 517


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,099,015
Number of Sequences: 59808
Number of extensions: 407601
Number of successful extensions: 965
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)