Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j07
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45010.1 68416.m04849 serine carboxypeptidase III, putative s...    27   4.4  
At1g24190.1 68414.m03051 paired amphipathic helix repeat-contain...    27   4.4  
At4g20690.1 68417.m03007 hypothetical protein                          27   5.9  
At5g35250.1 68418.m04179 hypothetical protein includes At2g05890...    27   7.7  

>At3g45010.1 68416.m04849 serine carboxypeptidase III, putative
           similar to serine carboxypeptidase III from Oryza sativa
           SP|P37891, Matricaria chamomilla GI:6960455, Hordeum
           vulgare SP|P21529, Triticum aestivum SP|P11515; contains
           Pfam profile PF0450 serine carboxypeptidase
          Length = 510

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 345 DDVRTYLMINLCFFLFSDYSLLLVAITTFQPFDRQPSPA-PTQT 217
           D   T+L   LC F+FS +S       T +P    PS + PT T
Sbjct: 2   DSKTTFLTFLLCIFIFSHFSPSTSKSLTEKPLSFSPSASLPTLT 45


>At1g24190.1 68414.m03051 paired amphipathic helix repeat-containing
           protein similar to transcription co-repressor Sin3
           [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 1353

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 23/65 (35%), Positives = 30/65 (46%)
 Frame = -3

Query: 405 RKYFSTLGINNPYMYQRNLDDDVRTYLMINLCFFLFSDYSLLLVAITTFQPFDRQPSPAP 226
           R Y S L I N  MY+R+       Y  + +   LF D+S LLV  T F P     +  P
Sbjct: 140 RVYKSFLDILN--MYRRDSKSITEVYQEVAI---LFRDHSDLLVEFTHFLPDTSATASIP 194

Query: 225 TQTTS 211
           +  TS
Sbjct: 195 SVKTS 199


>At4g20690.1 68417.m03007 hypothetical protein 
          Length = 138

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 305 KKHKFIIK*VRTSSSRFLWYI*GLLIPKVEKYFRYLFVTRQNTCNKKK 448
           KK  F+I+ +R S  R L     +L+P +E  F YL  +  N+CN+ +
Sbjct: 90  KKSSFVIRPIRLS--RGLVINRKILLPSLEIPFSYLCDSCINSCNRNE 135


>At5g35250.1 68418.m04179 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 384

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 346 VEIPLVHIGVVNS*SGKVFSLLICYPSEHL 435
           +E P V   V+N   GK F  L+C   E++
Sbjct: 274 IEYPTVLPDVINGLKGKTFQFLLCIQRENI 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,990,514
Number of Sequences: 28952
Number of extensions: 162346
Number of successful extensions: 315
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)