Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11f23
(319 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.009
SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33) 35 0.012
SB_9163| Best HMM Match : XS (HMM E-Value=0.84) 33 0.038
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036) 32 0.088
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.15
SB_40275| Best HMM Match : Cadherin (HMM E-Value=0) 31 0.20
SB_25996| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.82
SB_27495| Best HMM Match : VWA (HMM E-Value=0) 28 1.9
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0) 27 2.5
SB_42355| Best HMM Match : EGF (HMM E-Value=2.9e-05) 27 2.5
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23) 27 2.5
SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.5
SB_34774| Best HMM Match : DUF1610 (HMM E-Value=1.4) 27 4.4
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_39622| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=5.3) 26 5.8
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.8
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37) 26 5.8
SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.8
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.8
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.6
SB_5106| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-31) 26 7.6
SB_54252| Best HMM Match : F5_F8_type_C (HMM E-Value=6.1e-15) 26 7.6
SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22) 26 7.6
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.6
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 35.5 bits (78), Expect = 0.009
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 74 CPPVCSPPDCRPICGPASPLLCQSSVPP 157
CP CSP CRP C PL+C S PP
Sbjct: 1669 CPATCSPDSCRPEC----PLICCSVCPP 1692
Score = 31.9 bits (69), Expect = 0.12
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTQRC 169
PPV P C C P P++C + P C
Sbjct: 1795 PPVVCPKSCETTCTPDCPVMCCKNSSPATEC 1825
Score = 26.2 bits (55), Expect = 5.8
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 74 CPPVCSPPDCRPIC 115
CP CSP C P C
Sbjct: 1402 CPSACSPSGCNPDC 1415
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 74 CPPVCSPPDCRPICGPASPLLCQSSVPPT 160
CP CS C+P C P+ C +PPT
Sbjct: 1517 CPVGCSEHSCKPEC-PSK--CCMKVLPPT 1542
Score = 25.8 bits (54), Expect(2) = 1.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 68 GYCPPVCSPPDCRPIC 115
G CP C P +C+P C
Sbjct: 1456 GECPAGCLPSNCKPDC 1471
Score = 21.0 bits (42), Expect(2) = 1.2
Identities = 7/16 (43%), Positives = 8/16 (50%)
Frame = +2
Query: 92 PPDCRPICGPASPLLC 139
P DC C P P+ C
Sbjct: 1494 PSDCFESCKPNCPIKC 1509
>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
Length = 321
Score = 35.1 bits (77), Expect = 0.012
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 71 YCPPVCSPPDCRPICGPASPLL--CQSSVPPTQRC 169
Y PP +P C P C P SP+ CQSS PT+ C
Sbjct: 285 YQPPPMAPMGCAPQCSPVSPMFMGCQSSC-PTRCC 318
>SB_9163| Best HMM Match : XS (HMM E-Value=0.84)
Length = 424
Score = 33.5 bits (73), Expect = 0.038
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 68 GYCPPVCSPPDCRPICGPASPLLCQSSVPP 157
G C P C+P C P+C ++ LL Q+ +PP
Sbjct: 302 GSCLPACAP-GCNPLCCSSTSLLHQNRIPP 330
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 65 MGYCPPVCSPPDCRPICGPASPLLCQSSVP 154
MGY + P C C P P+LC S P
Sbjct: 361 MGYKKSLPCPRSCDRYCKPNCPILCCRSNP 390
>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
Length = 1336
Score = 32.3 bits (70), Expect = 0.088
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 110 ICGPASPLLCQSSVPPTQRCY 172
+CG + LLC+ VPP RCY
Sbjct: 555 VCGESKCLLCKEMVPPDHRCY 575
>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1584
Score = 31.5 bits (68), Expect = 0.15
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVP 154
PP PP C P+C A+P C ++ P
Sbjct: 1518 PPAPPPPVCMPMCAVAAPAPCPAACP 1543
>SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1747
Score = 31.1 bits (67), Expect = 0.20
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 134 LCQSSVPPTQRCYPVNPCINIYSCYTQI 217
L ++ PP +RC P NPC++ CY +
Sbjct: 988 LYEAVFPPEKRCKPHNPCLHGGKCYETV 1015
>SB_25996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 29.1 bits (62), Expect = 0.82
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 41 VYKLKK*KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINI 196
+Y+ K C PV + C P+ P+ S P C PVN C+N+
Sbjct: 112 IYREDKPVNNSCEPVNN--SCEPVNNSCEPVN-NSCEPVNNSCEPVNNCVNM 160
>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
Length = 1064
Score = 27.9 bits (59), Expect = 1.9
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 92 PPDCRPICGPASPLLCQSSVPPTQR 166
P C+P+ P P++C+ ++P R
Sbjct: 795 PGKCKPVESPVDPVICRGTLPNPSR 819
>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
Length = 1227
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 80 PVCSPPDCRPICGPA--SPLLCQSSVPPTQRCYP 175
P+ +P+ GPA SP+ C ++VP C P
Sbjct: 764 PISRVSPFQPVTGPAAPSPVPCNTTVPSAVACVP 797
>SB_42355| Best HMM Match : EGF (HMM E-Value=2.9e-05)
Length = 241
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Frame = +2
Query: 113 CGPASPLLCQSS-------VPPTQRCYPVNPCINIYSCYT 211
C P SP C S VP C+ NPC N SC T
Sbjct: 135 CVPGSPENCVSDAKWHQYVVPTKDECFTGNPCKNGGSCVT 174
>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
Length = 1189
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 92 PPDCRPICGPASPLLCQSSVPPTQRC 169
P DC C P C S+ PPT +C
Sbjct: 935 PSDCHFSCYPQCTPECCSTTPPTAQC 960
>SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = +2
Query: 74 CPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPC 187
CP C P P+ P +P L + PP PC
Sbjct: 18 CPTPCYGPVPHPLLRPCAPPLATALSPPPATALCPTPC 55
>SB_34774| Best HMM Match : DUF1610 (HMM E-Value=1.4)
Length = 576
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 95 PDCRPICGPASPLLCQSSVPPTQRCY-PVNPCIN 193
PD +CG +C+ VPP C+ PV ++
Sbjct: 182 PDKPHVCGEDQCSICKERVPPGHLCFMPVGEAVS 215
>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = -3
Query: 182 DLQDSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDNNPFF 60
D + T +L G ++++ +D+ PE R + P+F
Sbjct: 194 DFDEDTGILPKEDDGSDEDVEIEMADEEPEFLRADGDKPYF 234
>SB_39622| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=5.3)
Length = 107
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = +2
Query: 74 CPPVCSPPDCRPICGPASPLLC 139
CPP+C P C P P C
Sbjct: 81 CPPMCQPSAPNFSCAPGCPQRC 102
>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1135
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Frame = +2
Query: 86 CSPPDCRPIC-----GPAS-PLLCQSSVPPTQRCYPVNPCINIYSCY 208
C+PP +C GP PLL + PP P PC YS Y
Sbjct: 920 CAPPPATALCPTPCYGPVPHPLLRPCAPPPATALCPT-PCYGPYSPY 965
>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
Length = 1632
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 83 VCSPPD--CRPICGPASPLLCQSSVPPTQRCYPVNPCINIYSCY 208
+C P D CRP + L S V T PV PC++ + Y
Sbjct: 348 LCRPSDTLCRPSKSVSDTLCRPSEVAVTPCVDPVTPCVDPVTPY 391
>SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 165 RCVGGTLLWQRSGDAGPQIGRQ 100
RC GG W+ GD+G G Q
Sbjct: 721 RCSGGMTRWRSEGDSGLVTGNQ 742
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 165 RCVGGTLLWQRSGDAGPQIGRQSGGEQTGG 76
+C G T ++ G G + G + GGE GG
Sbjct: 198 KCEGSTDEKKKEGGGGGEEGAKEGGESEGG 227
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 38 QVYKLKK*KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRC 169
+V K K GYCP + P C P L S P Q+C
Sbjct: 1546 KVVKRPDAKSGYCPSLPREPRCSSRSRP--KCLLDSDCPGNQKC 1587
>SB_5106| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-31)
Length = 445
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 72 IVHQSVHLRIVVRSVDLHLRSFARAAC 152
+VHQ ++ +V R V +HL +F C
Sbjct: 117 VVHQVLYKELVARYVRIHLTTFQGKPC 143
>SB_54252| Best HMM Match : F5_F8_type_C (HMM E-Value=6.1e-15)
Length = 181
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 72 IVHQSVHLRIVVRSVDLHLRSFARAAC 152
+VHQ ++ +V R V +HL +F C
Sbjct: 115 VVHQVLYKELVARYVRIHLTTFQGKPC 141
>SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)
Length = 649
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 256 FLNSL*KSSIALHNLSVTAVYVDARIYRIAPLCWW 152
F+ ++ K S+ +H L+ + DAR R PL W+
Sbjct: 12 FVGNIDKDSVKIHWLTK---FFDARFVRFYPLAWY 43
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +2
Query: 77 PPVCSPPDCRPI---CGPASPLLCQSSVPPTQRCYPVNP 184
PP +PP P+ C P P+ C + +PP + P
Sbjct: 761 PP--APPQFAPVPPPCAPIPPMPCSAPLPPAPAPFSAAP 797
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,772,136
Number of Sequences: 59808
Number of extensions: 208234
Number of successful extensions: 650
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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