Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d15
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11990.1 68418.m01402 proline-rich family protein contains pr...    32   0.45 
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t...    31   1.0  
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    29   3.1  
At5g50910.1 68418.m06312 hypothetical protein                          28   7.2  
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex...    28   7.2  
At1g05550.1 68414.m00571 expressed protein contains Pfam profile...    28   7.2  

>At5g11990.1 68418.m01402 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 181

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 74  CPPVCSPPDCRP---ICGPASPLLCQSSVPP 157
           CP +CSPP  +P   +  P SP L  SS PP
Sbjct: 38  CPTICSPPPSKPSPSMSPPPSPSLPLSSSPP 68


>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
           carteri f. nagariensis GP|6523547; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 375

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = +2

Query: 71  YCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCIN 193
           YCPP   PP C  IC P  P       PPT   +   P  N
Sbjct: 29  YCPP---PPPCICICNPGPPPPQPDPQPPTPPTFQPAPPAN 66


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = +2

Query: 71  YCPPVCSPP--DCRPICGPASP 130
           +CP  C      C+PICGP SP
Sbjct: 35  FCPDSCHVECASCKPICGPPSP 56


>At5g50910.1 68418.m06312 hypothetical protein 
          Length = 116

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 181 SLHQHIQLLHSNYV-TQWTISIVNLKMVRNTHLFCKMYSKLVANNLLKF 324
           S   HI +  + ++  QWT   VNL  + + H+F   Y+    N   +F
Sbjct: 3   SFSWHIIVSANGFILNQWTTHFVNLMHIISPHMFISKYTSYNFNCAFRF 51


>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 494

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 77  PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 184
           PPV SPP   P+  P  P     S PP    +  +P
Sbjct: 431 PPVFSPPPSPPVYSPPPPPSIHYSSPPPPPVHHSSP 466


>At1g05550.1 68414.m00571 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 425

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 317 NRLLATSLLYILQNKCVFLTIFKFTIEIVHCV 222
           NR LAT L  +L NK   LT+F   +E+  C+
Sbjct: 14  NRKLATVLSIMLCNKLCRLTLFDRFVEVCSCL 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,481,402
Number of Sequences: 28952
Number of extensions: 260237
Number of successful extensions: 663
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)