Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d08
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56400.1 68416.m06272 WRKY family transcription factor DNA-bi...    33   0.24 
At1g69050.1 68414.m07901 expressed protein                             29   2.2  
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    28   5.1  
At3g16560.1 68416.m02116 protein phosphatase 2C-related / PP2C-r...    27   8.9  

>At3g56400.1 68416.m06272 WRKY family transcription factor
           DNA-binding protein 4 WRKY4 - Nicotiana tabacum,
           EMBL:AF193771
          Length = 294

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 393 GRDVTKVLEACAEQPGASPEDVAWNIFRCGYNRKAVLFDYMPAGGASS 536
           G D+T  L+    QPG+  ED+   I  C  N  +VL  + P   +SS
Sbjct: 18  GHDLTTQLQQLLSQPGSGLEDLVAKILVCFNNTISVLDTFEPISSSSS 65


>At1g69050.1 68414.m07901 expressed protein
          Length = 94

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +1

Query: 403 SPRCWRRAPSSPALVPRTWPGIYSDAATTG---RRCCSTTCPPVAPLAATRRIIPSYLVP 573
           S R  RRAP    L PR  P   + + TTG      C     P+ PL +   ++PS L P
Sbjct: 30  SCRLQRRAPCPLLLPPRPPPSAEAPSTTTGVSTSTFCQNGTDPI-PLLSP-LVLPSMLQP 87

Query: 574 IPT 582
            PT
Sbjct: 88  NPT 90


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 391 PGVTSPRCWRRAP-SSPALVPRTWPGIYSDAATTGRRCCSTTCPPVAPLAATRRIIPS 561
           PG T+P     +P SS A+ P T P   S A  +G     TT PP AP  +T  + PS
Sbjct: 175 PGSTTPPGGAHSPKSSSAVSPATSPP-GSMAPKSGSPVSPTTSPP-APPKSTSPVSPS 230


>At3g16560.1 68416.m02116 protein phosphatase 2C-related /
           PP2C-related contains protein phosphatase 2C domain
          Length = 493

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 391 PGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTTCP 519
           P + SP+ +R+ PSSPAL            +     C S+T P
Sbjct: 79  PSLDSPKSFRKVPSSPALSKLDILSPSLHGSMVSLSCSSSTSP 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,290,572
Number of Sequences: 28952
Number of extensions: 243502
Number of successful extensions: 737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)