Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11d03
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5863| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.041
SB_47219| Best HMM Match : DUF414 (HMM E-Value=1.7) 27 1.1
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9) 29 2.7
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19) 29 3.6
SB_36697| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41) 28 6.2
SB_27469| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-08) 28 6.2
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 28 8.3
SB_9589| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_5863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 629
Score = 35.5 bits (78), Expect = 0.041
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Frame = +3
Query: 303 FNSGKSCLFSLKEADINKAMSKFPIKVTVYKSLPCGCLPTKIVMGEATIDMTKEFVQ--- 473
FN GKSCLF + D+++ + PI V + P K++ G TI + + +
Sbjct: 68 FNKGKSCLFRMNVEDLHQKLQVTPIYVMLVDVWP---KKPKLI-GSTTIPLKRSIDRIID 123
Query: 474 -ARKKFLEDPSNVSYEALKDAFRIVGSDGVEAGEIIMFLRISCFGKLII 617
+K + PS E D F ++GS + G+ ++ +R+ G +I
Sbjct: 124 DVKKNGVSVPSFSKEENKFDIFNLMGS---KVGKAVLGVRLLSLGGSLI 169
>SB_47219| Best HMM Match : DUF414 (HMM E-Value=1.7)
Length = 704
Score = 27.1 bits (57), Expect(2) = 1.1
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +3
Query: 156 IVFAKSPCFSDKDFRTCVNIECPSVEPLEICDDDPGACVVKSGGPFVKTFNSGKSCLFSL 335
++ +KS +D DF + + + +E + G + KS F+K+ +S +S S
Sbjct: 322 VMRSKSDLGADSDFEFAMRRQRKRADSIE----EGGQYITKSSSSFMKSASSFRSEADST 377
Query: 336 KEADINKAMSKFPIK 380
+NK + PIK
Sbjct: 378 DAGGLNKVPVQGPIK 392
Score = 22.2 bits (45), Expect(2) = 1.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 426 IVMGEATIDMTKEFVQARKKFLEDPSNVS 512
++M E + ++ QAR++FL S VS
Sbjct: 432 LIMDEMEREQEWKYEQARRRFLASSSAVS 460
>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
Length = 492
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 521 CFVADITGVFQKLFPCLYKFFCHVYCCFSHYY 426
CF + GVF+ ++P + F V CF + Y
Sbjct: 5 CFSRCLPGVFRYVYPVYFTLFTFVSLCFRYVY 36
>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
Length = 3083
Score = 29.1 bits (62), Expect = 3.6
Identities = 8/40 (20%), Positives = 18/40 (45%)
Frame = -2
Query: 161 YNFINQHFKKKKSIILFSHFQLWEWEKQNFIFILFCNMWF 42
+N + + ++ H Q W+W + I ++F W+
Sbjct: 2743 FNLTKEIVDLSRPVVGLKHDQYWDWLSKQIIHMIFVGFWY 2782
>SB_36697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 55
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 626 KSSDDQFPKTGYTKKHYNFSRFNTIGPDN 540
+ SDD T Y ++HY+ +F+TI +N
Sbjct: 26 EGSDDNAHSTSYIQRHYDSIKFHTIVSEN 54
>SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)
Length = 689
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2
Query: 665 ISRATEVWWSGSLKSSDDQFPKTGYTK 585
I + WWSG L FPKT Y K
Sbjct: 162 IKEQQDTWWSGELNGKKGWFPKT-YVK 187
>SB_27469| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-08)
Length = 341
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = -3
Query: 439 SPITIFVGKQPQGRDLYTVTFIGNLDIALFISASFREKRHDLPLLNV 299
+P+ I +G Q + + F +L +A+F+S SFR K+ L+N+
Sbjct: 9 TPLNILIGVQFV--EAVLIIFANSLALAVFLSKSFRVKKSTYFLINL 53
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 476 CLYKFFCHVYCCFSHYYLCW*TTAR-KRFIHCYFY 375
C ++C+ YC + YY C+ + +CY+Y
Sbjct: 474 CYCYYYCYCYCYYYCYYYCYCYCYYCCYYCYCYYY 508
>SB_9589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = -3
Query: 211 FTHVLKSLSEKQGLFANTILSTNTSRRKSPSSCLAIFNYGNGKNRILYLYYFVICGFYTN 32
F H L + + +F T+++ ++ + SPS +IF N +NR+ F + N
Sbjct: 94 FVHSLDDENCDERVFLGTLVAETSTNKNSPSGIESIFQLEN-RNRVTTELQFTSKPHHKN 152
Query: 31 NFDIVKQRN 5
I + N
Sbjct: 153 TTPIAQHDN 161
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,285,009
Number of Sequences: 59808
Number of extensions: 482467
Number of successful extensions: 1415
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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