Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c22
         (554 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)            31   0.84 
SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_1985| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_10785| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
          Length = 921

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 310 RVGSPCDCARIQSKDSRLSNKRSRKTHRKRIRKAYKQRSSESRWRPHKKCCVI 468
           R G  C   ++++++ +   KR +K  RKR  K  K+R +    R  K C  +
Sbjct: 315 RAGHLCHMQKLETEEEKRERKREKK-RRKRAEKRAKRRRNVGTGRRCKACITV 366


>SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 209 ATGPDPRPVQNQTSAIKSVSNARANVPAPWTQLV 310
           A    P PV N T A+ + +   +N P P+ ++V
Sbjct: 787 AVSNSPEPVSNSTEAVSTSNEPASNSPEPYFRIV 820


>SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 346 SKDSRLSNKRSRKTHRKRIRKAYKQRSSESRWRPHK 453
           S  SR   +RSR  HR R+R     R S+  W+  +
Sbjct: 269 STRSRDGRERSRSPHRSRVRSPSGSRDSKGFWQEER 304


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 319  SPCDCARIQSKDSRLSNKRSRKTHRKRIRKAYKQRSSESR 438
            +PC  A   S     + KR+ +  +KRI K  K+  +E R
Sbjct: 2264 APCKAAPAPSAVRTWARKRAERIRKKRIEKENKEHGAEQR 2303


>SB_1985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 301 TVSRVGSPCDCARIQSKDSRLSNKRSRKTHR 393
           TV R G+     RIQS +  L+NK+S   H+
Sbjct: 2   TVGRYGNDSSSPRIQSWELPLTNKKSNNVHK 32


>SB_10785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = +2

Query: 314 WGLLATAPEFSPKTRDLVTNVPEKHIENVFEKLTNNDLQNLDGAPIKNVVLSFKRQVKKT 493
           W    T P FS +  DL   +PE   +   E+  N D Q  DG         F  ++K  
Sbjct: 69  WMSYLTLPRFSRRCFDLQEKIPE---DQACEETVNKDTQTPDGNK------GFSLKLKAI 119

Query: 494 LCTYPI*YILINI 532
           L      Y+LI++
Sbjct: 120 LAVLNDFYVLISV 132


>SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2124

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 85   NSEVSGIPGAFAIR*HNMNKYSVHSTNSLKPCI 183
            N   SGI  A  ++ HN+N  ++   N+LKPCI
Sbjct: 1258 NCNASGIQRA--LKKHNVNADTMSFPNALKPCI 1288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,057,098
Number of Sequences: 59808
Number of extensions: 331337
Number of successful extensions: 1003
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)