Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c21
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31350.1 68417.m04446 expressed protein contains Pfam profile...    30   1.8  
At5g01530.1 68418.m00068 chlorophyll A-B binding protein CP29 (L...    27   9.8  
At2g36720.1 68415.m04505 PHD finger transcription factor, putative     27   9.8  

>At4g31350.1 68417.m04446 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 711

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 359 PDTDPFEGL*RVPISGHSIEFKLVIRVKESSPLHFAS 249
           P T PFE L  +   GH  +F + +   + SP+H +S
Sbjct: 463 PGTLPFEPLWEMFFRGHENKFSVYVHASKKSPVHTSS 499


>At5g01530.1 68418.m00068 chlorophyll A-B binding protein CP29
           (LHCB4) identical to CP29 [Arabidopsis thaliana]
           GI:298036; contains Pfam profile: PF00504 chlorophyll
           A-B binding protein
          Length = 290

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 522 AKSFPFICKKTLASLEWNVNCDIPNTDYAYSDVLGRCYKMYLTPMTWSEAYRVCSAD-QS 698
           AKS PF     +  ++    C++ +  +A    LG     +LT +TW +A +V   D  S
Sbjct: 119 AKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSS 178

Query: 699 YL 704
           YL
Sbjct: 179 YL 180


>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
          Length = 1007

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 393 TVDGVSIMDVYNKWKPGEPNDSHNNED-CVVIHRNDGLMNDDDCAKSFPFICKKTLASLE 569
           T +GVS+ +    +  G    +++N D CV+      L+  D C ++F   C    +   
Sbjct: 590 TSNGVSLHEWATTFSHGRKYSANDNNDLCVICADGGNLLLCDSCPRAFHIECVSLPSIPR 649

Query: 570 WNVNC 584
            N +C
Sbjct: 650 GNWHC 654


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,120,600
Number of Sequences: 28952
Number of extensions: 342944
Number of successful extensions: 848
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)