Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11c20
(702 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0) 146 1e-35
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10) 142 2e-34
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0) 136 2e-32
SB_37957| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3) 29 2.8
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_11623| Best HMM Match : ABC1 (HMM E-Value=0) 29 3.6
SB_44356| Best HMM Match : Osteopontin (HMM E-Value=1) 29 4.8
SB_3247| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_32938| Best HMM Match : DUF204 (HMM E-Value=0.6) 29 4.8
SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 6.4
SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22) 28 6.4
SB_7872| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2) 28 6.4
SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 6.4
SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 6.4
SB_37714| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 855
Score = 146 bits (355), Expect = 1e-35
Identities = 92/192 (47%), Positives = 115/192 (59%), Gaps = 1/192 (0%)
Frame = +3
Query: 129 EMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPS 308
+M+ + E FQAE+ ++M LIIN+ Y NKEIFLRELISNSSDALDKIR SLTD +
Sbjct: 68 QMKELRDKAEKHEFQAEVNRMMKLIINSLYRNKEIFLRELISNSSDALDKIRLMSLTDKT 127
Query: 309 KLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADI 488
DSG EL IKI +K L + DTGIGMTK +L+ NL GT A
Sbjct: 128 AFDSGDELSIKIKADKENNILHVTDTGIGMTKEELIKNL------GTIA----------- 170
Query: 489 SMIGQFGVGFYSSYLVADRVTVHSKHNDDEQYVWESSAGGSFTVRPD-SGEPLGRGTKIV 665
S +ADRV V SK+NDD+QY+WES A SF++ D G L RGT I
Sbjct: 171 -----------KSGTIADRVIVTSKNNDDKQYIWESDA-SSFSISEDPRGPTLKRGTTIS 218
Query: 666 LHVKEDLAEFME 701
LH+KE+ +++E
Sbjct: 219 LHLKEEARDYLE 230
>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
Length = 739
Score = 142 bits (344), Expect = 2e-34
Identities = 78/202 (38%), Positives = 127/202 (62%), Gaps = 6/202 (2%)
Frame = +3
Query: 108 AVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSN-KEIFLRELISNSSDALDKIR 284
+V+ + E + + E + ++ + + L++++ + ++F+RE+ISN+SDAL+K+R
Sbjct: 43 SVRLLSETTDDRSVEESSETSGEDVEEPLELLMSSQKTKLSQVFIREVISNASDALEKVR 102
Query: 285 YESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFME 464
+ LT ++ L I I ++ GT TI D G+GMT+ +L+++LG IAKSG+K FME
Sbjct: 103 HFFLTGKDVSETETSLEIMIETDQEAGTFTIQDNGVGMTEEELMDHLGVIAKSGSKVFME 162
Query: 465 ALQAGADIS---MIGQFGVGFYSSYLVADRVTVHSK--HNDDEQYVWESSAGGSFTVRPD 629
L+ A S +IGQFGVGFYS+++VAD+V V++K + + Y W S GS+
Sbjct: 163 KLKNEARSSHENIIGQFGVGFYSTFMVADKVDVYTKSYQPNSQGYFWTSDGSGSYEYAEA 222
Query: 630 SGEPLGRGTKIVLHVKEDLAEF 695
+G + RGTK+VLH+KED F
Sbjct: 223 NG--VARGTKLVLHLKEDCKRF 242
>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 581
Score = 136 bits (329), Expect = 2e-32
Identities = 60/77 (77%), Positives = 72/77 (93%)
Frame = +3
Query: 471 QAGADISMIGQFGVGFYSSYLVADRVTVHSKHNDDEQYVWESSAGGSFTVRPDSGEPLGR 650
+AGADISMIGQFGVGFYS+YLVA++V V +KHNDDEQY+WES+AGGSFTV+ DSGEPLGR
Sbjct: 59 KAGADISMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWESAAGGSFTVKRDSGEPLGR 118
Query: 651 GTKIVLHVKEDLAEFME 701
GTKIVL++KED E++E
Sbjct: 119 GTKIVLYLKEDQTEYLE 135
>SB_37957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +1
Query: 499 DSSVLASTPVTWSLTA*LFTLNTMTTSNTCGNLLQEARSQSAQTAVSPLVEVQRSSFTSK 678
+ S TPVT T+ + TTS T G ++ + +++ T +PLV +R+SFT +
Sbjct: 54 EKSTKRKTPVTKGTTS----VTKETTSVTKG-IISVTKGEASITIGAPLVTKERTSFTKE 108
Query: 679 RTWQN 693
T N
Sbjct: 109 TTLVN 113
>SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)
Length = 375
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 75 PSSHFV*IKQKAVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELIS 254
PS V KA K +E ET+P E+ +F+ + ++ S+ +FLR I
Sbjct: 71 PSGSSVSESGKAKTKKEKEKETKPFEIALVSFEEDEFPMI-------LSDDSLFLRGFIQ 123
Query: 255 NSSDALDKI 281
SDA +KI
Sbjct: 124 LRSDASEKI 132
>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/57 (21%), Positives = 31/57 (54%)
Frame = +3
Query: 306 SKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQA 476
+K+ G+E+ + ++NE ++ +G ++ D++ N+G T++ +E +A
Sbjct: 265 AKISDGQEIKFSVFIDENEYRSICLNLQVGPSEPDVLKNIGVTRMPETRSNVENCRA 321
>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -2
Query: 149 RWLCLHFFRHFLYCFLFNSHKMTRGFLTHVFQSAKYRTLVSVLLS 15
R + H + C LF SH +TR +H RTL S LS
Sbjct: 993 RVISSHTLSRHVTCTLFQSHPVTRTLSSHTLSRPVTRTLSSHTLS 1037
>SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)
Length = 780
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +2
Query: 329 AVHQDHSQQERGHSYDHRYRYWYDQ----GRFGEQFGNHREIWY*SFHGGSSSRCRHQHD 496
AV H+ RGHS+ W G F + FG+ W + G+S CR
Sbjct: 150 AVGVPHAHSYRGHSFRRGATTWAFHLGIPGEFIQVFGD----WASDAYRGNSL-CRANCQ 204
Query: 497 WTVRCWLLLQ 526
W +RC ++ Q
Sbjct: 205 WLIRCVVIFQ 214
>SB_44356| Best HMM Match : Osteopontin (HMM E-Value=1)
Length = 365
Score = 28.7 bits (61), Expect = 4.8
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +3
Query: 246 LISNSSDALDKIRY--ESLTDPSKLDSGKELYIKI--IPNKNEGTLTIIDTGIGMTKADL 413
LIS+S + ++ R+ E + S+L S + +Y + N+N L I+D+ I +A+
Sbjct: 283 LISSSDEENNQERFKEEKIATSSQLSS-ERVYQRTQEANNQNNRLLGIVDSNILKARANA 341
Query: 414 VNNLGTIAKSGTKAFMEALQAGA 482
N LG A S +++ + Q A
Sbjct: 342 GNKLGKSAMSRSRSAAQRRQLAA 364
>SB_3247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 183 AQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPS-KLDSGKELYIKIIPNKN 359
AQ+ L+ ++ + N + ++ + S ALD++ YE DP K DS ++++I + N+
Sbjct: 20 AQVCELLKDSQFLNMDATDAQIHTVVSGALDRLHYEK--DPCVKYDSNRKVWIYLHRNRT 77
Query: 360 E 362
E
Sbjct: 78 E 78
>SB_32938| Best HMM Match : DUF204 (HMM E-Value=0.6)
Length = 433
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 575 VVIVFRVNS-HAVSDQVTGVEANTELSNHADVGTCLKSLHESFSTRFRDGSQIV 417
+V+ + N+ H ++ QV + + + H G CLKSL F + RDG V
Sbjct: 374 IVLSLKFNTGHEMNVQVQSKLYSVKDNTHVTWGACLKSL--DFECKMRDGQSFV 425
>SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 289
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 170 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSAKYRT 36
ERE +L W C HF + L L HK LTHVF +A ++
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNANSKS 158
>SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 170 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSAKYRT 36
ERE +L W C HF + L L HK LTHVF +A ++
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNANSKS 158
>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
Length = 1249
Score = 28.3 bits (60), Expect = 6.4
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 481 PTSA*LDSSVLASTP--VTWSLTA*LFTLNTMTTSNTCGNLLQEARSQSAQTAVSPLVEV 654
PTS DS++ AS+P VT +L+ FT ++ ++ T L S ++ V +
Sbjct: 271 PTSLVNDSTIFASSPVDVTPALSTKSFTSISLDSTRT-STLSASVDETSTSIKLNSSV-I 328
Query: 655 QRSSFTSKRTWQNS 696
+RS TS WQNS
Sbjct: 329 KRSLLTSS-LWQNS 341
>SB_7872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 264 DALDKIRYESLTDPSKLDSGKELYIKIIPNKNE 362
DAL K+R + +PS +D G E+ ++ +N+
Sbjct: 32 DALSKLRQKEYAEPSGIDEGDEVLLRQTRRENK 64
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 170 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSAKYRT 36
ERE +L W C HF + L L HK LTHVF +A ++
Sbjct: 479 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNANSKS 521
>SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2)
Length = 306
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 170 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSAKYRT 36
ERE +L W C HF + L L HK LTHVF +A ++
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNANSKS 158
>SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 412
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 170 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSAKYRT 36
ERE +L W C HF + L L HK LTHVF +A ++
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNANSKS 158
>SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 246
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 170 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSAKYRT 36
ERE +L W C HF + L L HK LTHVF +A ++
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNANSKS 158
>SB_37714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 406
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 646 PRGSPLSGRTVNEPPAEDSHTYCSSSLCLE*TVTRSATK 530
PRG GR V P +D HT + C + T R TK
Sbjct: 358 PRGRWPLGRIVETYPGQDGHTRVAKVQCGDKTYIRPITK 396
>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1276
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 585 VWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAE 692
VW SSA G+ ++ + E L T + K+++AE
Sbjct: 528 VWSSSASGANMIQGEPAEHLAEATAAPITKKDEIAE 563
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,448,352
Number of Sequences: 59808
Number of extensions: 492117
Number of successful extensions: 1486
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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