Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c17
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26600.1 68417.m03834 nucleolar protein, putative similar to ...    31   0.57 
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ...    30   1.7  
At1g74540.1 68414.m08636 cytochrome P450, putative similar to cy...    29   4.0  
At1g04570.1 68414.m00450 integral membrane transporter family pr...    28   5.3  
At4g33200.1 68417.m04727 myosin, putative similar to myosin (GI:...    27   9.3  

>At4g26600.1 68417.m03834 nucleolar protein, putative similar to
           SP|P46087 Proliferating-cell nucleolar antigen p120
           (Proliferation-associated nucleolar protein p120) {Homo
           sapiens}; contains Pfam profile PF01189: NOL1/NOP2/sun
           family
          Length = 671

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = +1

Query: 115 ARVVINNVLIFFTEMKIDPKKLKSVNFCRSRELAAAICGVSVRTVDKIKNECVKGEVSSP 294
           A ++ N  +I+  EMK+   K  S N  R       +C    R + K     V G+ S  
Sbjct: 361 AALMKNTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDGRELTK-----VLGQSSVD 415

Query: 295 RESINRPCTVTALDDFDKSV 354
           R  ++ PC+ T +   D+SV
Sbjct: 416 RVLLDAPCSGTGVISKDESV 435


>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
           SP|P46087 Proliferating-cell nucleolar antigen p120
           (Proliferation-associated nucleolar protein p120) {Homo
           sapiens}, SP|P40991 Nucleolar protein NOP2
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 682

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/80 (27%), Positives = 36/80 (45%)
 Frame = +1

Query: 115 ARVVINNVLIFFTEMKIDPKKLKSVNFCRSRELAAAICGVSVRTVDKIKNECVKGEVSSP 294
           A ++ N  LI+  EMK+   K  + N  R       +C    R + K     V G+ +  
Sbjct: 378 AALMKNTGLIYANEMKVPRLKSLTANLHRMGVTNTIVCNYDGRELPK-----VLGQNTVD 432

Query: 295 RESINRPCTVTALDDFDKSV 354
           R  ++ PC+ T +   D+SV
Sbjct: 433 RVLLDAPCSGTGIISKDESV 452


>At1g74540.1 68414.m08636 cytochrome P450, putative similar to
           cytochrome P450 GB:O48922 [Glycine max]; contains Pfam
           profile: PF00067 cytochrome P450
          Length = 497

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 703 YLSHLVHPCLAKFVCGCDFGSPKSHLNKFLVECLHYLSGS 584
           YL+ +V   +++ + G +FGS +    K +VE  H LSGS
Sbjct: 173 YLAAVVLNTISRLMIGKEFGSEEGKEFKAIVEKEHLLSGS 212


>At1g04570.1 68414.m00450 integral membrane transporter family
           protein contains 8 transmembrane domains; contains Pfam
           PF03092: BT1 family; contains TIGRFAMS TIGR00788:
           folate/biopterin transporter; similar to hypothetical
           protein GB:AAD38263
          Length = 542

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = -2

Query: 338 SSNAVTVQGRLMLSRGELTSPFTHSFLILSTVLTLTPHIAAASSRERQKLTLFNFLGSIF 159
           +S A  V G L+     LT+P   SFL+ S +L+L   ++ +S  E   L       S+ 
Sbjct: 226 ASAAGGVLGNLLGGYLLLTTPPKISFLVFSALLSLQLVVSLSSKEESFGLPRIAETSSVL 285

Query: 158 ISVKK 144
            SVKK
Sbjct: 286 ESVKK 290


>At4g33200.1 68417.m04727 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]
          Length = 1522

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/111 (18%), Positives = 53/111 (47%)
 Frame = +1

Query: 157  MKIDPKKLKSVNFCRSRELAAAICGVSVRTVDKIKNECVKGEVSSPRESINRPCTVTALD 336
            +K+D  +L ++N C    +      +S++    ++ E + G V   +++     ++ +L+
Sbjct: 940  LKLDAARLATINECNKNAVLEKQLDISMKEKSAVERE-LNGMVELKKDNALLKNSMNSLE 998

Query: 337  DFDKSVIKQIVSSFYCDGEYPSTAKILSRATERIDGFQCSITSMRKILIEL 489
              ++ + K+++++        +T + L  A +R    Q S+ S+ + L  L
Sbjct: 999  KKNRVLEKELLNA---KTNCNNTLQKLKEAEKRCSELQTSVQSLEEKLSHL 1046


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,025,299
Number of Sequences: 28952
Number of extensions: 299131
Number of successful extensions: 703
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)