Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c16
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05270.1 68416.m00575 expressed protein similar to endosome-a...    30   1.8  
At4g16530.1 68417.m02502 expressed protein contains Pfam profile...    28   5.5  
At3g46140.1 68416.m04993 protein kinase-related contains eukaryo...    28   5.5  
At5g44990.1 68418.m05517 hypothetical protein                          27   9.5  
At3g45790.1 68416.m04955 protein kinase-related contains eukaryo...    27   9.5  

>At3g05270.1 68416.m00575 expressed protein similar to
           endosome-associated protein (EEA1) (GI:1016368) [Homo
           sapiens]; similar to smooth muscle myosin heavy chain
           (GI:4417214) [Homo sapiens; contains Pfam profile
           PF05911: Plant protein of unknown function (DUF869)
          Length = 615

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = +3

Query: 222 DSRKTISKIN--INE*FQYLKTKIPRISDAKLK-EEIFVDQQILT*ANER*KF*FEVERS 392
           +S K + K N  +N+    LKT + RIS+ + K E + V++  L  A    K   E  +S
Sbjct: 329 ESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALNGSKEQIEALQS 388

Query: 393 RKKSLGGFCESLS*FSWEQKK*ELLTNHSG 482
           R K + G    +     E ++ ELL   SG
Sbjct: 389 RLKEIEGKLSEMKKLEAENQELELLLGESG 418


>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
           PF04510: Family of unknown function (DUF577)
          Length = 774

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -2

Query: 583 IRLQDFQERDLKESRKNKS*VTYCILKLYKQK 488
           + +Q+ +E D+K  RK  S VTY +++L+K K
Sbjct: 113 LTMQETKESDIKILRKIVSFVTYNVVELHKDK 144


>At3g46140.1 68416.m04993 protein kinase-related contains eukaryotic
           protein kinase domain, INTERPRO:IPR000719
          Length = 376

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 481 ELLFAYKALGCNMSLKIYFSDSLLDLFPENLGAVSDEYGERFHQDIMH 624
           E LF  +    N+ L+     SL DL  +NLG +S++  +   +DI++
Sbjct: 164 ETLFGGERTNYNLILEYCSGKSLFDLVNDNLGGLSEKDVKLLARDILY 211


>At5g44990.1 68418.m05517 hypothetical protein
          Length = 350

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 550 LDLFPENLGAVSDEYGERFHQDI 618
           LDL+P NL A+ DE  E  H  I
Sbjct: 162 LDLYPPNLRAIIDETNEWIHDGI 184


>At3g45790.1 68416.m04955 protein kinase-related contains eukaryotic
           protein kinase domain, INTERPRO:IPR000719
          Length = 376

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 481 ELLFAYKALGCNMSLKIYFSDSLLDLFPENLGAVSDEYGERFHQDIMH 624
           E LF  +    N+ L+     SL DL   NLG +S++  +   +DI++
Sbjct: 164 ETLFGGERTNYNLILEYCSGKSLFDLVNSNLGGLSEKDVKLLARDILY 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,817,014
Number of Sequences: 28952
Number of extensions: 302569
Number of successful extensions: 645
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)