Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11c13
(784 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
U81040-1|AAB39356.1| 283|Tribolium castaneum TC Deformed protein. 25 0.90
U81038-1|AAB39355.1| 412|Tribolium castaneum transcription fact... 25 0.90
AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein. 25 0.90
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 24 1.2
AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone recepto... 23 3.6
AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax pr... 22 6.4
AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax pr... 22 6.4
AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax pr... 22 6.4
AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax pr... 22 6.4
AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax pr... 22 6.4
AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax pr... 22 6.4
AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein. 22 6.4
AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduce... 22 6.4
AF261823-1|AAG13010.1| 157|Tribolium castaneum cephalothorax pr... 21 8.4
>U81040-1|AAB39356.1| 283|Tribolium castaneum TC Deformed protein.
Length = 283
Score = 24.6 bits (51), Expect = 0.90
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 653 MCE-LNTEPPVRSFHRLTVISRGLTPPENRNITDTYSAYTP 772
MCE LNT+PPV S + +TP N S +P
Sbjct: 112 MCESLNTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSP 152
>U81038-1|AAB39355.1| 412|Tribolium castaneum transcription factor
Deformed protein.
Length = 412
Score = 24.6 bits (51), Expect = 0.90
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 653 MCE-LNTEPPVRSFHRLTVISRGLTPPENRNITDTYSAYTP 772
MCE LNT+PPV S + +TP N S +P
Sbjct: 112 MCESLNTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSP 152
>AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein.
Length = 412
Score = 24.6 bits (51), Expect = 0.90
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 653 MCE-LNTEPPVRSFHRLTVISRGLTPPENRNITDTYSAYTP 772
MCE LNT+PPV S + +TP N S +P
Sbjct: 112 MCESLNTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSP 152
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 24.2 bits (50), Expect = 1.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 611 LVIKSVKPSDAGLYMCELN 667
L+I+ K D+G Y+C +N
Sbjct: 292 LIIREAKVEDSGKYLCVVN 310
>AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone receptor
(isoform A) protein.
Length = 549
Score = 22.6 bits (46), Expect = 3.6
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 668 TEPPVRSFHRLTVISRGLTPPENRNITDTYS 760
T P H TVIS G + P + D YS
Sbjct: 118 TPSPGPPSHPYTVISNGYSSPMSSGSYDPYS 148
>AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.8 bits (44), Expect = 6.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = -2
Query: 456 PLA-PSTTQVNKAS---SPLFTVTPPPGARIQASLGSTSS*ELSVDVLVFSTE 310
PL+ PS + K+S SPL T PPG ++ S S STE
Sbjct: 128 PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPASSTSSTSSTE 180
>AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.8 bits (44), Expect = 6.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = -2
Query: 456 PLA-PSTTQVNKAS---SPLFTVTPPPGARIQASLGSTSS*ELSVDVLVFSTE 310
PL+ PS + K+S SPL T PPG ++ S S STE
Sbjct: 128 PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTE 180
>AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax
protein.
Length = 230
Score = 21.8 bits (44), Expect = 6.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = -2
Query: 456 PLA-PSTTQVNKAS---SPLFTVTPPPGARIQASLGSTSS*ELSVDVLVFSTE 310
PL+ PS + K+S SPL T PPG ++ S S STE
Sbjct: 128 PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTE 180
>AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.8 bits (44), Expect = 6.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = -2
Query: 456 PLA-PSTTQVNKAS---SPLFTVTPPPGARIQASLGSTSS*ELSVDVLVFSTE 310
PL+ PS + K+S SPL T PPG ++ S S STE
Sbjct: 128 PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTE 180
>AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax
protein.
Length = 297
Score = 21.8 bits (44), Expect = 6.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = -2
Query: 456 PLA-PSTTQVNKAS---SPLFTVTPPPGARIQASLGSTSS*ELSVDVLVFSTE 310
PL+ PS + K+S SPL T PPG ++ S S STE
Sbjct: 128 PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTE 180
>AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax
protein.
Length = 268
Score = 21.8 bits (44), Expect = 6.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = -2
Query: 456 PLA-PSTTQVNKAS---SPLFTVTPPPGARIQASLGSTSS*ELSVDVLVFSTE 310
PL+ PS + K+S SPL T PPG ++ S S STE
Sbjct: 84 PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTE 136
>AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein.
Length = 312
Score = 21.8 bits (44), Expect = 6.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = -2
Query: 456 PLA-PSTTQVNKAS---SPLFTVTPPPGARIQASLGSTSS*ELSVDVLVFSTE 310
PL+ PS + K+S SPL T PPG ++ S S STE
Sbjct: 128 PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTE 180
>AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduced
Scr protein.
Length = 312
Score = 21.8 bits (44), Expect = 6.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = -2
Query: 456 PLA-PSTTQVNKAS---SPLFTVTPPPGARIQASLGSTSS*ELSVDVLVFSTE 310
PL+ PS + K+S SPL T PPG ++ S S STE
Sbjct: 128 PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTE 180
>AF261823-1|AAG13010.1| 157|Tribolium castaneum cephalothorax
protein.
Length = 157
Score = 21.4 bits (43), Expect = 8.4
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Frame = -2
Query: 456 PLA-PSTTQVNKAS---SPLFTVTPPPG 385
PL+ PS + K+S SPL T PPG
Sbjct: 128 PLSTPSNSNATKSSGLTSPLSVSTSPPG 155
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,500
Number of Sequences: 336
Number of extensions: 3391
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -