Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c08
         (377 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   0.95 
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)                   28   2.9  
SB_25552| Best HMM Match : Transket_pyr (HMM E-Value=1.6e-05)          27   3.8  
SB_57869| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  

>SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1756

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 92   KLSAFYKTCDKPWSYANMTAEAPLCCENSQVKVCSSVVTLKSTVQPEAKT 241
            K    Y TC   + + N+T  A       QV +CS+  +L+  +Q +  T
Sbjct: 1197 KRHVVYITCRNEFGFNNITTYAKTIDFGCQVNICSASASLEGEIQRQRNT 1246


>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +1

Query: 136 RKHDCRSPTLLRKFPSESLFVGGNTKINSATGSKDYHII 252
           +K   RSP L RK   ESL V G+      TG  D H+I
Sbjct: 92  KKLSDRSPALARKQNKESLKVIGDHATGLCTGHDDDHLI 130


>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
          Length = 667

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 164 CCENSQVKVCSSVVTLKSTVQPEAKTT 244
           CC+N    VC   VT ++T  P +K T
Sbjct: 161 CCDNGCTSVCVPPVTQQTTALPTSKRT 187


>SB_25552| Best HMM Match : Transket_pyr (HMM E-Value=1.6e-05)
          Length = 405

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 142 HDCRSPTLLRKFPSESLFVGGNTKINSATGSKDYH 246
           HD R+ T L  FP    + G  T  ++ATG+K  H
Sbjct: 359 HDIRN-TCLISFPLSYSYAGRATSASTATGNKHQH 392


>SB_57869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2   CKILCXAXXTATKAKGP-EILCSRLKDVNE 88
           CKI C A  T TKA      LCS ++  N+
Sbjct: 310 CKIGCPASCTCTKASSKCSSLCSSIESFND 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,472,543
Number of Sequences: 59808
Number of extensions: 140029
Number of successful extensions: 311
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)