Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c08
         (377 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family...    28   1.8  
At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family...    28   1.8  
At2g23450.2 68415.m02800 protein kinase family protein contains ...    27   3.1  
At2g23450.1 68415.m02799 protein kinase family protein contains ...    27   3.1  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    27   5.5  
At1g67040.1 68414.m07624 expressed protein ; expression supporte...    26   7.2  
At1g66640.1 68414.m07572 expressed protein                             26   7.2  
At1g66320.1 68414.m07531 F-box family protein contains F-box dom...    26   7.2  
At3g30290.1 68416.m03825 cytochrome P450 family protein similar ...    26   9.6  

>At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family
           protein low similarity to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 349

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 155 APLCCENSQVKVCSSVVTLKSTVQPE 232
           A + C  S++ VCS V  L S+ QP+
Sbjct: 322 AEIICSESEITVCSDVAYLDSSQQPQ 347


>At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family
           protein low similarity to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 488

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 155 APLCCENSQVKVCSSVVTLKSTVQPE 232
           A + C  S++ VCS V  L S+ QP+
Sbjct: 461 AEIICSESEITVCSDVAYLDSSQQPQ 486


>At2g23450.2 68415.m02800 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 708

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 261 LLINYMVVFASGCTVDFSVTTDEQTFTWEFSQQSGASAVMFA*LHGLSH 115
           L + Y   F++GC++ F  +  E+    +FS Q+     +F    GLSH
Sbjct: 55  LTLPYPFGFSNGCSIRFDCSAAEKPMIGDFSVQNVTENSIFV---GLSH 100


>At2g23450.1 68415.m02799 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 708

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 261 LLINYMVVFASGCTVDFSVTTDEQTFTWEFSQQSGASAVMFA*LHGLSH 115
           L + Y   F++GC++ F  +  E+    +FS Q+     +F    GLSH
Sbjct: 55  LTLPYPFGFSNGCSIRFDCSAAEKPMIGDFSVQNVTENSIFV---GLSH 100


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 179 GNFRSKVGLRQSCLRNSMVCRTFCKKL 99
           GN R +  +RQSCL     C   C+KL
Sbjct: 484 GNTRLEEQIRQSCLDPIPSCSNVCRKL 510


>At1g67040.1 68414.m07624 expressed protein ; expression supported
           by MPSS
          Length = 826

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 112 NVRQTMELRKHDCRSPTLLRK 174
           N  + ME++KH+ RSP+L+ +
Sbjct: 85  NRNEVMEVKKHEMRSPSLVAR 105


>At1g66640.1 68414.m07572 expressed protein
          Length = 416

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 370 IHFIEVMXEISNSVINANTVRFIYNFYR 287
           +HF+  +  + N  I A+T+  IY++ R
Sbjct: 263 LHFLVAISRVKNMTIAASTLEIIYDYSR 290


>At1g66320.1 68414.m07531 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 457

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 370 IHFIEVMXEISNSVINANTVRFIYNFYR 287
           +HF+  +  + N  I A+T+  IY++ R
Sbjct: 304 LHFLVAISRVKNMTIAASTLEIIYDYSR 331


>At3g30290.1 68416.m03825 cytochrome P450 family protein similar to
           Cytochrome P450 85 (SP:Q43147) {Lycopersicon
           esculentum}; similar to GB:C71417 from [Arabidopsis
           thaliana] (Nature 391 (6666), 485-488 (1998))
          Length = 408

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 270 KITLLINYMVVFASGCTVDFSVTTDE 193
           ++T+  +YM++F  GC V  S  T E
Sbjct: 378 EVTVTRSYMLMFPRGCDVQISKDTQE 403


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,857,770
Number of Sequences: 28952
Number of extensions: 96614
Number of successful extensions: 262
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)