Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c06
         (423 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)               30   0.69 
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             29   2.1  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   4.8  
SB_58830| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06)           27   8.5  
SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)                27   8.5  

>SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)
          Length = 863

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 268 TRHRPTSTLQETTTLRRRDCLYQWRRNCLVPILFSYYYC 384
           T+   T+T   TTT + R   YQ R+N    IL S+++C
Sbjct: 78  TKTTTTTTTTTTTTKQGRSSAYQ-RQNLFTIILISFFFC 115


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 310 LRRRDCLYQWRRNCLVPI 363
           +R RDCLY W  +C + +
Sbjct: 686 VRNRDCLYMWNESCAIEL 703


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 83   LKLIKMVRLSIILNRIPVIKFRKGGASHV 169
            ++L +  R   +LN  PV  FRKGG  HV
Sbjct: 7327 IRLTEKNRKRYVLNVKPVQDFRKGGRKHV 7355


>SB_58830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 271 RHRPTSTLQETTTLRRRDCLYQWRRNC 351
           R+ PTST   T   R RDC Y     C
Sbjct: 25  RYVPTSTCHRTCDNRARDCKYVTTSTC 51


>SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06)
          Length = 1003

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 166 CRYKLSRSFRTHCCCYCWNPCAK-PACCSN-EYWC 264
           CR   S SF ++  CYC   C     CC++ E++C
Sbjct: 265 CRDPPSFSFNSNLTCYCDAKCENFEDCCADYEHFC 299


>SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)
          Length = 623

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +1

Query: 208 CYCWNPCAKPACCSNEYWCYTRHRPTSTLQE-TTTLRRRDCLYQWRRNCL-VPILFSYYY 381
           CYC +  A P    ++Y+C +   P    Q   T++     LYQ+    + VP+L   YY
Sbjct: 22  CYCTSVTA-PVLL-HQYYCTSITAPVLLHQYYCTSITVPVLLYQYYCTSITVPVLLYQYY 79

Query: 382 CSYI 393
           C+ I
Sbjct: 80  CTSI 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,716,823
Number of Sequences: 59808
Number of extensions: 173486
Number of successful extensions: 393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)