Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c06
         (423 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol pro...    28   2.3  
At3g04570.1 68416.m00485 DNA-binding protein-related contains Pf...    27   6.9  

>At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol
           protease identical to SP|P43297 Cysteine proteinase
           RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana},
           thiol protease RD21A SP:P43297 from [Arabidopsis
           thaliana]
          Length = 462

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
 Frame = +1

Query: 208 CYCWNPCAKPA--CCSNEYWCYTRHRPTSTLQETTTL 312
           C+ W  C   A  CC + Y C     P   L + T L
Sbjct: 397 CFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCL 433


>At3g04570.1 68416.m00485 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 315

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 287 ARYKRQPLSEEEIAYINGGG 346
           A Y+R PL EEE A   GGG
Sbjct: 230 ATYERLPLEEEEAAERGGGG 249


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,740,054
Number of Sequences: 28952
Number of extensions: 105016
Number of successful extensions: 226
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)