Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c05
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7135| Best HMM Match : MBOAT (HMM E-Value=0.0021)                   55   7e-08
SB_55107| Best HMM Match : ABC_membrane (HMM E-Value=0.056)            28   6.5  
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)                    28   8.6  
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_7135| Best HMM Match : MBOAT (HMM E-Value=0.0021)
          Length = 355

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 23/62 (37%), Positives = 38/62 (61%)
 Frame = +3

Query: 525 LLLCEIYVLNPKMWQQIRGIQMIAAMKIISVAIELDRNIYXNILXPVEYGGYIFCPANCI 704
           LL+ E+++ +P  W ++RG QMI  MK+IS+A + D+ I   +   +EY GY    ++ I
Sbjct: 113 LLVIELFIASPSAWHRVRGTQMILVMKMISIAFDYDQGILAQLPNLLEYFGYSISASSII 172

Query: 705 LG 710
            G
Sbjct: 173 FG 174


>SB_55107| Best HMM Match : ABC_membrane (HMM E-Value=0.056)
          Length = 219

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +3

Query: 462 VLSWTKSKRRSLFVSFTIITFLLLCEIYVLNPKMW 566
           V+ WT +K   +F++  +I F++L E  ++  ++W
Sbjct: 4   VVFWTYAKSIGVFIASIVILFMILSEGALVGSRIW 38


>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
          Length = 419

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 404 WVSNFLDNRANYWILYNDHSAIV 472
           W+S FL NR+ Y I+   HS+ V
Sbjct: 337 WISGFLRNRSQYVIVNGSHSSKV 359


>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 404 WVSNFLDNRANYWILYNDHSAIV 472
           WVS FL NR+ Y ++   HS+ V
Sbjct: 764 WVSGFLRNRSQYVVVNGSHSSKV 786


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,605,221
Number of Sequences: 59808
Number of extensions: 417486
Number of successful extensions: 983
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)