Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c05
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g06744.1 68417.m01106 leucine-rich repeat family protein / ex...    29   3.0  
At5g12970.1 68418.m01487 C2 domain-containing protein contains I...    28   5.3  
At1g28420.1 68414.m03494 homeobox transcription factor, putative...    28   7.0  
At1g27630.1 68414.m03375 cyclin family protein similar to cyclin...    28   7.0  

>At4g06744.1 68417.m01106 leucine-rich repeat family protein /
           extensin family protein similar to leucine-rich
           repeat/extensin 1 (GI:13809918) {Arabidopsis thaliana};
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 404

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 336 PLPHNVRHSLSLITGVYLLYNNIGSAIFWTIGLTTGS 446
           PLP ++  S+S +T V  L N+    I   IG  TG+
Sbjct: 229 PLPRSILRSMSTLTEVLFLNNDFTGCIPHEIGFLTGA 265


>At5g12970.1 68418.m01487 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 769

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 399 NIGSAIFWTIG-LTTGSYTMITVLSWTKSKRRSLFVSFTIITFLLL 533
           +IG  +   IG L T     +++LSW   +  +LFV F +I  ++L
Sbjct: 679 SIGGRVQTVIGDLATQGERFLSLLSWRDPRATTLFVLFCLIAAIVL 724


>At1g28420.1 68414.m03494 homeobox transcription factor, putative
            similar to homeobox transcription factor Hox7 GI:19486
            [Lycopersicon peruvianum]
          Length = 1703

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 321  TIQFLPLPHNVRHSLSLITGVYLLYNNIGSAIFWTIGLTTGSYTMITV 464
            T++ +   H+ RH  +++ GV  + +       W  GLT G Y  ++V
Sbjct: 901  TMKSIVPQHSERHKNTVVGGVDAVIDESNQGQSWIQGLTEGDYCHLSV 948


>At1g27630.1 68414.m03375 cyclin family protein similar to cyclin T1
           [Homo sapiens] GI:2981196; contains Pfam profile
           PF00134: Cyclin, N-terminal domain
          Length = 317

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 272 SFVHSWFCTHR*VRPSIFGVNIFCIHLVKFFQNTKFSSIFEFSLSFHETFHVVK 111
           +FVH W  T   ++     +    +HL   FQN K  S  ++ L F  T  ++K
Sbjct: 202 NFVHDWIRTTLCLQYKPHVIATATVHLAATFQNAKVGSRRDWWLEFGVTTKLLK 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,455,531
Number of Sequences: 28952
Number of extensions: 292305
Number of successful extensions: 722
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)