Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c04
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)                   48   9e-06
SB_12379| Best HMM Match : PDZ (HMM E-Value=4.7e-19)                   47   2e-05
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   41   0.001
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12)                   40   0.002
SB_11360| Best HMM Match : PDZ (HMM E-Value=0)                         37   0.017
SB_4077| Best HMM Match : PDZ (HMM E-Value=3.5e-18)                    35   0.051
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)                   33   0.16 
SB_11669| Best HMM Match : PDZ (HMM E-Value=6.4e-15)                   31   0.83 
SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_4796| Best HMM Match : Arfaptin (HMM E-Value=3.5e-16)               29   4.4  
SB_33275| Best HMM Match : PDZ (HMM E-Value=5.2e-11)                   28   5.9  

>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
          Length = 619

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 24/55 (43%), Positives = 36/55 (65%)
 Frame = +1

Query: 214 IYVTEVHEGSPAAKSGLRMHDKILQCXGYDFTXVTHKKAVSYIKKHPILNLLVAR 378
           IYVT+V    PAA  GL+  DKIL+  G +    TH +AV ++K + +++LLV+R
Sbjct: 561 IYVTKVQPEGPAA-FGLKPGDKILEVNGINLRNTTHDRAVLFLKNNQVVDLLVSR 614


>SB_12379| Best HMM Match : PDZ (HMM E-Value=4.7e-19)
          Length = 129

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/47 (46%), Positives = 29/47 (61%)
 Frame = +1

Query: 193 QGYTXNGIYVTEVHEGSPAAKSGLRMHDKILQCXGYDFTXVTHKKAV 333
           QG   +GI+V  V EG+PA + GLR  DKIL     DF  +T ++AV
Sbjct: 48  QGGNKHGIFVAGVREGNPAHRQGLRRGDKILMANDIDFKDITREEAV 94


>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/47 (46%), Positives = 29/47 (61%)
 Frame = +1

Query: 193  QGYTXNGIYVTEVHEGSPAAKSGLRMHDKILQCXGYDFTXVTHKKAV 333
            QG   +GI+V  V EG+PA + GLR  DKIL     DF  +T ++AV
Sbjct: 939  QGGNKHGIFVAGVREGNPAHRQGLRRGDKILMANDIDFKDITREEAV 985


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +1

Query: 211  GIYVTEVHEGSPAAKSG-LRMHDKILQCXGYDFTXVTHKKAVSYIKKHP 354
            GIYV  +    PA ++G +R+ D+IL+  G     VTHK+AV  IK+ P
Sbjct: 1280 GIYVKSLMLNGPADRNGKIRIGDRILEVNGVSLVGVTHKQAVEIIKRAP 1328



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 211  GIYVTEVHEGSPAAKSG-LRMHDKILQCXGYDFTXVTHKKAVSYIKKHPILNLLV 372
            GI+V  V EGS A K G L+  D+IL   G     V+H+ AV  +K  P L  LV
Sbjct: 995  GIFVKSVTEGSVAFKDGRLKAGDRILAVNGTSLEQVSHEYAVMQLKTAPTLVELV 1049


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/59 (33%), Positives = 34/59 (57%)
 Frame = +1

Query: 211  GIYVTEVHEGSPAAKSGLRMHDKILQCXGYDFTXVTHKKAVSYIKKHPILNLLVARKGV 387
            GIY+  V E S A+++GL+  D+I+   G  F  ++H  A+  +K +   N++V  K V
Sbjct: 1333 GIYIAGVDEHSAASRAGLKCGDQIMDVNGTSFLNISHASAIKALKANK--NMMVTIKDV 1389



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 211  GIYVTEVHEGSPAAKSGLRMHDKILQCXGYDFTXVTHKKAV 333
            G+YV+ +  GS +   GL   D IL     +F  +TH +AV
Sbjct: 1268 GLYVSSIDTGSVSEAIGLLPGDHILAVNDVNFDGLTHDQAV 1308


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +1

Query: 214  IYVTEVHEGSPAAKSG-LRMHDKILQCXGYDFTXVTHKKAVSYIKK-HPILNLLVARK 381
            +Y+ ++  G+PA K G LR  D++LQ        VTH  A+  +K   P++ L VARK
Sbjct: 2314 LYIKDIQPGTPAEKCGHLRTGDQLLQVNDECLVGVTHAYALEVLKNTPPLVKLTVARK 2371


>SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12)
          Length = 217

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 20/45 (44%), Positives = 26/45 (57%)
 Frame = +1

Query: 211 GIYVTEVHEGSPAAKSGLRMHDKILQCXGYDFTXVTHKKAVSYIK 345
           GI+V  VH+ SPAA  GLR  D+ILQ  G +       KA+  +K
Sbjct: 65  GIFVAFVHKDSPAALGGLRFGDQILQIDGENMAGFDTDKAMKRLK 109


>SB_11360| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 625

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +1

Query: 208 NGIYVTEVHEGSPAAKSG-LRMHDKILQCXGYDFTXVTHKKAVSYIK 345
           NGIY+T++ EG  A + G L++ DKI+     +   V+H+ AV  +K
Sbjct: 43  NGIYITKIIEGGAAQQDGRLQVGDKIISVNLQNLEDVSHEDAVQVLK 89


>SB_4077| Best HMM Match : PDZ (HMM E-Value=3.5e-18)
          Length = 458

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 214 IYVTEVHEGSPAAK-SGLRMHDKILQCXGYDFTXVTHKKAVSYI 342
           I ++E+H+G PAA+  GL + D IL   G D     H  AV  +
Sbjct: 271 ILISEIHDGMPAARCGGLYVGDAILAVNGIDLQDAKHNDAVKIL 314


>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2149

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 196 GYTXNG---IYVTEVHEGSPAAKSGLRMHDKILQCXGYDFTXVTHKKAVSYIK 345
           G+T  G   + V  V +GSPAA++ L+  D IL+  G +    TH   V  +K
Sbjct: 475 GFTLTGNAPVCVRSVDKGSPAAQARLKPGDHILEINGLNVRNKTHAHVVELLK 527



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 196 GYTXNG---IYVTEVHEGSPAAKSGLRMHDKILQCXGYDFTXVTHKKAVSYIK 345
           G+T  G   + V  V +GSPAA++ L+  D IL+  G +    TH   V  +K
Sbjct: 307 GFTLTGNAPVCVRLVDKGSPAAQARLKPGDHILEINGLNVRNKTHAHVVELLK 359


>SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)
          Length = 556

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 253 KSGLRMHDKILQCXGYDFTXVTHKKAVSYIK--KHPILNLLVARK 381
           ++G R+ D+IL      F  + HK+AV +IK  KH I+ L  A K
Sbjct: 212 QAGFRVGDQILNVNDKSFENIKHKEAVDFIKSNKHIIVTLKAAGK 256


>SB_11669| Best HMM Match : PDZ (HMM E-Value=6.4e-15)
          Length = 85

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 220 VTEVHEGSPAAKSGLRMHDKILQCXGYDFTXVTHKKAVSYIKK 348
           V+++  G  A  +GLR+ D+IL   G     +TH +A   IK+
Sbjct: 32  VSQLTPGGKAITNGLRVEDQILSINGMGCEDMTHMEAQESIKR 74


>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +1

Query: 211  GIYVTEVHEGSPAAKSG-LRMHDKILQCXGYDFTXVTHKKAVS-YIKKHPILNLLVARKG 384
            GIY+ +V +  PAAK G L+  D+++   G     V+ +KA    ++    + L + ++G
Sbjct: 1006 GIYIKQVVKDGPAAKDGRLQAGDQLIAVNGESLIGVSQEKAAECMVRSGANVTLRIVKQG 1065


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 217  YVTEVHEGSPAAKSGLRMHDKILQCXGYDFTXVTHKKAVSYI 342
            +V  V +GSPA ++G+R  D ILQ  G     + H + V  I
Sbjct: 2684 HVIVVEDGSPAERAGVRKGDFILQVNGNAVKGLPHFQIVRLI 2725


>SB_4796| Best HMM Match : Arfaptin (HMM E-Value=3.5e-16)
          Length = 270

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +1

Query: 214 IYVTEVHEGSPAAKSG-LRMHDKILQCXGYDF---TXVTHKKAVSYIKKHPILN 363
           +YV +V + +PA+K G L+  D+I+   G      T V   +A+  +K+  I+N
Sbjct: 44  LYVVQVFDNTPASKDGTLQAGDEIVGVNGKSLRGKTKVDVARAIQAVKEEVIIN 97


>SB_33275| Best HMM Match : PDZ (HMM E-Value=5.2e-11)
          Length = 881

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 241 SPAAKSGLRMHDKILQCXGYDFTXVTHKKAVSYIKKHP 354
           SPA K+GL+  D+IL   G       H++ V  I + P
Sbjct: 308 SPAHKAGLKPGDQILYVNGSSVERHPHEQVVKLIARSP 345


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,965,154
Number of Sequences: 59808
Number of extensions: 214767
Number of successful extensions: 358
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)