Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c02
         (408 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70300.1 68414.m08088 potassium transporter, putative similar...    30   0.69 
At4g31600.1 68417.m04489 UDP-glucuronic acid/UDP-N-acetylgalacto...    29   1.6  
At1g05520.1 68414.m00565 transport protein, putative similar to ...    28   2.8  
At5g39980.1 68418.m04848 pentatricopeptide (PPR) repeat-containi...    27   4.8  
At3g15870.1 68416.m02007 fatty acid desaturase family protein si...    27   6.4  
At5g41300.1 68418.m05019 receptor-like protein kinase-related co...    26   8.5  
At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE...    26   8.5  

>At1g70300.1 68414.m08088 potassium transporter, putative similar to
           potassium transporter HAK2p [Mesembryanthemum
           crystallinum] gi|14091471|gb|AAK53759; KUP/HAK/KT
           Transporter family member, PMID:11500563; contains Pfam
           profile PF02705: K+ potassium transporter
          Length = 782

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 280 GGVGYPYVNMRMKSERGSGLSYDIGIYVNQNYLRIN 387
           GGV Y   N  MK++ GSGL   + I +   +LR N
Sbjct: 723 GGVAYIMGNAYMKAKPGSGLLKRLAINIGYEFLRRN 758


>At4g31600.1 68417.m04489 UDP-glucuronic
           acid/UDP-N-acetylgalactosamine transporter-related
           contains weak similarity to UDP-glucuronic
           acid/UDP-N-acetylgalactosamine transporter (UDP-
           GlcA/UDP-GalNAc transporter) (Swiss-Prot:Q9NTN3) [Homo
           sapiens]
          Length = 323

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 217 IITGIQALDSLNSKATVNITAGGVGYPYVNMRMKSERGSGLSYDI 351
           ++ G   + +LN    V  TAGGV Y Y   R K  + + L  D+
Sbjct: 274 VLLGGVEVHALNVSGLVVNTAGGVWYSYAKYRQKKAKPAKLMSDL 318


>At1g05520.1 68414.m00565 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 783

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 115 DISSSLVHHKLVQYNAIPFMKRVKNYFYSSADNKIITGIQALD 243
           D+S  L  HK +  +A PF K+ +  FY +  N+++     LD
Sbjct: 325 DLSEPLRSHKDLDKDAAPFYKKAEK-FYDALANQLVNQGHVLD 366


>At5g39980.1 68418.m04848 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 678

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 186 LHTLHERYRVVLDQLVMYQGTGYIADKKMIGLNTDAQGQTEEHER 52
           L++ ++RY  V++     +  GY  D  +I +  +A G+  E E+
Sbjct: 545 LYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEK 589


>At3g15870.1 68416.m02007 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 292

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 120 IQFLGTSQAGPIQRDTFHEACEELLLQ 200
           + FLG  Q   I+RD+F E    +LLQ
Sbjct: 22  LDFLGREQVSNIRRDSFVEPLGSILLQ 48


>At5g41300.1 68418.m05019 receptor-like protein kinase-related
           contains weak similarity to receptor-like protein kinase
           homolog RK20-1 (GI:4530126) [Phaseolus vulgaris];
           contains Pfam profile: PF01657 Domain of unknown
           function DUF26
          Length = 287

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 282 ARSNVHGRLTVERVQRLDTCNNFIIGTAVEVVLHTLHERYRVV--LDQLVMYQGTGYIA 112
           A   V+G         + TCNN +    +E+V +  + R  ++  +D +V Y    +++
Sbjct: 78  ASDTVYGMFLCTGDVNITTCNNCVKNATIEIVKNCTNHREAIIYYIDCMVRYSDKFFLS 136


>At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE)
           similar to cytokinesis-related Sec1 protein KEULE
           [Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
           Pfam domain, PF00995: Sec1 family
          Length = 666

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = -1

Query: 255 TVERVQRLDTCNNFIIGTAVEVVLHTLHE-RYRVVLDQLVMYQGTGY--IADKKMIGLNT 85
           ++E   + +TC   I+  +++ +   +HE  Y  +   L+  +G  Y  +   K  G   
Sbjct: 243 SIENFPQTETCELLILDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHVIPSKSGGQPE 302

Query: 84  DAQGQTEEHERFHCDRRRA 28
                 EEH+    + R A
Sbjct: 303 KKDVLLEEHDPIWLELRHA 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,577,487
Number of Sequences: 28952
Number of extensions: 163573
Number of successful extensions: 386
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)