Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b22
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48570| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.32 
SB_21022| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_9210| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_30137| Best HMM Match : Phosphodiest (HMM E-Value=0)                29   3.9  
SB_11650| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_49896| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_30323| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)                    28   9.1  
SB_38659| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_12453| Best HMM Match : DUF765 (HMM E-Value=5)                      28   9.1  

>SB_48570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -3

Query: 492 LEDSKIERSI*IPPD--CLFHSLSNVLWRICLSCEVRRALMRAVIARATSVASGERCWCN 319
           L D+++ RS+ +     CLF  L N   + C S  V      A I  +++ +SG+RCWC 
Sbjct: 76  LTDARVVRSLVVESGLACLFECLWN---KECFSVNVE-----AGICNSSNSSSGQRCWCE 127

Query: 318 LSRSKRQSV 292
              + R+S+
Sbjct: 128 HLSTDRRSL 136


>SB_21022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
 Frame = +3

Query: 270 FVWRTMQRRIASSNGSGCTSSALRTRPKWPALSPHASMRVSLHMTNRFARVHWINYGI-- 443
           F W    RR+++S   G      R  P+W + SP++    +  +     R  W N G+  
Sbjct: 175 FSWIDWTRRVSNSCSPGDPLVLERPPPRWSSNSPYSESYYN-SLAVVLQRRDWENPGVTQ 233

Query: 444 -NSLVGFRCFSLFWNLQETRQLRPT*RL 524
            N L     F+ + N +E R  RP+ +L
Sbjct: 234 LNRLAAHPPFASWRNSEEARTDRPSQQL 261


>SB_9210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +3

Query: 270 FVWRTMQRRIASSNGSGCTSSALRTRPKWPALSPHASMRVSLHMTNRFARVHWINYGI-- 443
           FV+  +Q+ +++S   G      R  P+W + SP++    +  +     R  W N G+  
Sbjct: 19  FVYTVIQKVVSNSCSPGDPLVLERPPPRWSSNSPYSESYYN-SLAVVLQRRDWENPGVTQ 77

Query: 444 -NSLVGFRCFSLFWNLQETRQLRPT*RL 524
            N L     F+ + N +E R  RP+ +L
Sbjct: 78  LNRLAAHPPFASWRNSEEARTDRPSQQL 105


>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1065

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 372 HASMRV-SLHMTNRFARVHWINYGINSLVGFRCFSLFWNLQETRQLRPT 515
           + S R+ +L+  +R  ++H+IN     L    C S  ++ +E  +LRP+
Sbjct: 440 YMSSRIRTLNRRSRLFKLHYINLNRRDLAKPTCLSFVYDSRENAELRPS 488


>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1486

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/81 (22%), Positives = 37/81 (45%)
 Frame = +2

Query: 272 RMADDAATDCLFERLRLHQQRSPDATEVARAITARINARLTSHDKQIRQSTLDKLWNKQS 451
           R+ D   T  L  ++ +         E +     R+N  +TS+D    + T ++LW K  
Sbjct: 347 RLLDGLYTAKLLNKVNIILVSDHSLIETSNKRQIRLNDYITSNDYYENRGTTEQLWPK-P 405

Query: 452 GGIQMLLSILESSRDTPTSTY 514
           G ++ +L+ L ++ ++    Y
Sbjct: 406 GQMEKVLNALSTANNSHLKIY 426


>SB_30137| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 655

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/81 (22%), Positives = 37/81 (45%)
 Frame = +2

Query: 272 RMADDAATDCLFERLRLHQQRSPDATEVARAITARINARLTSHDKQIRQSTLDKLWNKQS 451
           R+ D   T  L  ++ +         E +     R+N  +TS+D    + T ++LW K  
Sbjct: 249 RLLDGLYTAKLLNKVNIILVSDHSLIETSNKRQIRLNDYITSNDYYENRGTTEQLWPK-P 307

Query: 452 GGIQMLLSILESSRDTPTSTY 514
           G ++ +L+ L ++ ++    Y
Sbjct: 308 GQMEKVLNALSTANNSHLKIY 328


>SB_11650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +1

Query: 331 ALSGRDRSGPRYHRT 375
           A +GRDR+G RYHRT
Sbjct: 2   ATNGRDRTGDRYHRT 16



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +1

Query: 331 ALSGRDRSGPRYHRT 375
           A +GRDR+G RYHRT
Sbjct: 92  ATNGRDRTGDRYHRT 106


>SB_49896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
 Frame = +3

Query: 252 KLGKNLFVWRTMQRRIASSNGSGCTSSALRTRPKWPALSPHASMRVSLHMTNRFARVHWI 431
           ++G N   +  +     SS G G      R  P+W + SP++    +  +     R  W 
Sbjct: 45  RIGLNACSFVRLHHSKLSSTGPGDPLVLERPPPRWSSNSPYSESYYN-SLAVVLQRRDWE 103

Query: 432 NYGI---NSLVGFRCFSLFWNLQETRQLRPT*RL 524
           N G+   N L     F+ + N +E R  RP+ +L
Sbjct: 104 NPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQL 137


>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1169

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 488 SRDTPTST-YVTAILRETLCLKQGKGKKCAANNLARQQCA 604
           SR TP S+ Y    LR+T C++   G KC   + A   C+
Sbjct: 208 SRPTPCSSGYYANTLRKTACVRCEAGFKCPTTSAAPIACS 247


>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +2

Query: 272  RMADDAATD---CLFERLRLHQQRSPDATEVARAITARINARLTSHD 403
            R   DA  D   C   + +    + PD T+ A+A    INARL S D
Sbjct: 974  RACKDALIDEHWCPCLQFKAADHKRPDITKAAQAAVQHINARLNSTD 1020


>SB_30323| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +2

Query: 497 TPTSTYVTAILRETLCLKQGKGKKCAANNLARQQCAQQFISANGTQVIIRTLLATHGKRD 676
           TP    V    ++T+ L    G K       R   A  F +ANG + ++R LL    K D
Sbjct: 283 TPLMMAVLTNTKDTVSLLLENGAKVNTKAFKRL-AAVHFAAANGFRHVLRLLLQCGAKID 341

Query: 677 GNV 685
           G V
Sbjct: 342 GKV 344


>SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)
          Length = 940

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +2

Query: 248 KKTRKKPFRMADDAATDCLFERLRLHQQRSPDATEVARAITARINARLTSHDKQIRQSTL 427
           K+ +  P  M  D A       L      S + T+++   + R +A L S D  I+ +T+
Sbjct: 187 KRIKSHPLNMPSDCAPSGSTVNLEKRVSSSGE-TKLSDLGSIRSDANLHSMDLAIQSNTV 245

Query: 428 DKLWNKQSGGIQ 463
           D L  + SGG Q
Sbjct: 246 DGLSAQASGGNQ 257


>SB_38659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +3

Query: 291 RRIASSNGSGCTSSALRTRPKWPALSPHASMRVSLHMTNRFARVHWINYGI---NSLVGF 461
           RR+++S   G      R  P+W + SP++    +  +     R  W N G+   N L   
Sbjct: 2   RRVSNSCSPGDPLVLERPPPRWSSNSPYSESYYN-SLAVVLQRRDWENPGVTQLNRLAAH 60

Query: 462 RCFSLFWNLQETRQLRPT*RL 524
             F+ + N +E R  RP+ +L
Sbjct: 61  PPFASWRNSEEARTDRPSQQL 81


>SB_12453| Best HMM Match : DUF765 (HMM E-Value=5)
          Length = 140

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
 Frame = +3

Query: 255 LGKNLFVWRTMQRRIASSNGSGCTSSALRTRPKWPALSPHASMRVSLHMTNRFARVHWIN 434
           L K +  W  ++   ++S   G      R  P+W + SP++    +  +     R  W N
Sbjct: 2   LSKRVVKWIDLKSLTSNSCSPGDPLVLERPPPRWSSNSPYSESYYN-SLAVVLQRRDWEN 60

Query: 435 YGI---NSLVGFRCFSLFWNLQETRQLRPT*RL 524
            G+   N L     F+ + N +E R  RP+ +L
Sbjct: 61  PGVTQLNRLAAHPPFASWRNSEEARTDRPSQQL 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,967,981
Number of Sequences: 59808
Number of extensions: 487113
Number of successful extensions: 930
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)