Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b17
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)                 29   3.2  
SB_678| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.8  
SB_57036| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)
          Length = 664

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 107 TDQKGRGERRQVCKNQYGSETSSYR-RTNQSVYKKNCIHADLPNEIDSSGTKKG 265
           T QKG  E ++ C N  G E+S+++    +   KKN       N++DS  +  G
Sbjct: 362 TQQKGTDEGKRACVNPSGGESSAHKSERKKKTPKKN------KNQLDSENSNTG 409


>SB_678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 303 FYEQCFKSNKSSKPFLVPL 247
           FY QCF  N+   P ++PL
Sbjct: 42  FYRQCFTKNRDFNPLVLPL 60


>SB_57036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 215 YSFFCKRIDLFVDSLMFHFHIDSCKPVSFLLFLSDQYK 102
           Y  FCK I++F+ +      + S  P  FL+     YK
Sbjct: 113 YEIFCKAIEIFLPARRMPVRLPSLPPSDFLVSDHQAYK 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,200,481
Number of Sequences: 59808
Number of extensions: 380935
Number of successful extensions: 940
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)