Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b12
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g06599.1 68417.m01024 ubiquitin family protein contains Pfam ...   162   2e-40
At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative...    50   1e-06
At2g30100.1 68415.m03663 ubiquitin family protein low similarity...    46   2e-05
At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative...    43   2e-04
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi...    40   0.002
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu...    37   0.010
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ...    35   0.054
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu...    32   0.38 
At3g42770.1 68416.m04468 F-box family protein contains F-box dom...    29   2.0  
At5g60520.1 68418.m07589 late embryogenesis abundant protein-rel...    29   2.7  
At3g06030.1 68416.m00688 NPK1-related protein kinase, putative (...    29   3.5  
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa...    28   4.7  
At5g55540.1 68418.m06919 expressed protein                             28   6.2  
At3g53590.1 68416.m05919 leucine-rich repeat transmembrane prote...    28   6.2  
At1g64470.1 68414.m07309 ubiquitin family protein contains INTER...    28   6.2  

>At4g06599.1 68417.m01024 ubiquitin family protein contains Pfam
           domian PF00240: Ubiquitin family
          Length = 340

 Score =  162 bits (393), Expect = 2e-40
 Identities = 85/193 (44%), Positives = 117/193 (60%)
 Frame = +1

Query: 73  INDNPIKLSVRWNGKEFEIPELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATD 252
           + +  + L+V+WNGKE+ +  +   DSVA LK  I   T V P RQKLL  K   K++ D
Sbjct: 19  LTEEELTLTVKWNGKEYTV-RICADDSVAELKRRICLLTTVLPKRQKLLYPKIGNKLSDD 77

Query: 253 NCTLADLNLKPNLKIMMMGSLEEAIVGARTKPXXXXXXXXXXXXXXXXXXXXXXXYIAKI 432
           +  L+ ++ KP+LK+ M+G++E+ I+  + +                           K+
Sbjct: 78  SLLLSSISFKPSLKMTMIGTVEDDIIVDQAESPEIVDDFELGKEEAVDVKDKEVNK-QKL 136

Query: 433 NKRIRDYKINVLNEPRPGKKLLVLDIDYTLFDHRSVAETGYELMRPFLHVFLTSAYEDYD 612
            +RI  YKIN+    R GKKLLVLDIDYTLFDHRS AE   +LMRP+LH FLT+AY +YD
Sbjct: 137 RRRIDQYKINLRTPCRQGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYD 196

Query: 613 IVIWSATGMKWIE 651
           I+IWSAT MKW+E
Sbjct: 197 IMIWSATSMKWVE 209


>At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative
           (UBP7) similar to GI:11993467
          Length = 532

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 27/87 (31%), Positives = 46/87 (52%)
 Frame = +1

Query: 88  IKLSVRWNGKEFEIPELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLA 267
           + +SV+W  K FE  E+  S    + K  + + +GV P+RQK++    +G +  D+   +
Sbjct: 57  LTVSVKWQKKVFESIEIDTSQPPFVFKAQLYDLSGVPPERQKIM---VKGGLLKDDADWS 113

Query: 268 DLNLKPNLKIMMMGSLEEAIVGARTKP 348
            L LK   K+MMMG+ +E +      P
Sbjct: 114 TLGLKNGQKLMMMGTADEIVKAPEKGP 140


>At2g30100.1 68415.m03663 ubiquitin family protein low similarity to
           SP|Q9UQ13 Leucine-rich repeat protein SHOC-2
           (Ras-binding protein Sur-8) {Homo sapiens}; contains
           Pfam profiles PF00240: Ubiquitin family, PF01535: PPR
           repeat, PF00560: Leucine Rich Repeat
          Length = 897

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 28/78 (35%), Positives = 44/78 (56%)
 Frame = +1

Query: 79  DNPIKLSVRWNGKEFEIPELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNC 258
           D+ IKL+V++ GK   +  +SP  +V  LK  ++  T V P  QKL+   F+GKV  +  
Sbjct: 533 DSTIKLTVKFGGKSIPL-SVSPDCTVKDLKSQLQPITNVLPRGQKLI---FKGKVLVETS 588

Query: 259 TLADLNLKPNLKIMMMGS 312
           TL   ++    K+M+M S
Sbjct: 589 TLKQSDVGSGAKLMLMAS 606


>At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative
           (UBP6) similar to GI:11993465
          Length = 482

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 24/78 (30%), Positives = 43/78 (55%)
 Frame = +1

Query: 94  LSVRWNGKEFEIPELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADL 273
           +SV+W  K  +  E+  S    + K  + + TGV P+RQK++    +G +  D+   A +
Sbjct: 4   VSVKWQKKVLDGIEIDVSLPPYVFKAQLYDLTGVPPERQKIM---VKGGLLKDDGDWAAI 60

Query: 274 NLKPNLKIMMMGSLEEAI 327
            +K   K+MMMG+ +E +
Sbjct: 61  GVKDGQKLMMMGTADEIV 78


>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
           to DNA repair by nucleotide excision (NER) RAD23
           protein, isoform I GI:1914683 from [Daucus carota]
          Length = 378

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 26/72 (36%), Positives = 39/72 (54%)
 Frame = +1

Query: 109 NGKEFEIPELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLKPN 288
           +G  FEI E+ P+D V+ +K AIE   G      K + +  +GKV  D  TL + N+  N
Sbjct: 9   SGSNFEI-EVKPADKVSDVKTAIETVKGAEYPAAKQMLI-HQGKVLKDETTLEENNVVEN 66

Query: 289 LKIMMMGSLEEA 324
             I++M S  +A
Sbjct: 67  SFIVIMLSKTKA 78


>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
           polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
           thaliana] (Genetics 139 (2), 921-939 (1995))
          Length = 631

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +1

Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
           ++  SDS+  +K  I+N  G+  D+Q+L+   F GK   D  TLAD N++
Sbjct: 18  DVETSDSIHNVKAKIQNKEGIPLDQQRLI---FAGKQLEDGLTLADYNIQ 64



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +1

Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
           ++  SD++  +K  I++  G+RPD Q+L+    E     DN TLAD  ++
Sbjct: 175 KVESSDTIENVKAKIQDREGLRPDHQRLI-FHGEELFTEDNRTLADYGIR 223



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 18/51 (35%), Positives = 30/51 (58%)
 Frame = +1

Query: 127 IPELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNL 279
           I E+  SD++A +K  I+   G++PD+Q L+   F G+   D  TL D ++
Sbjct: 565 ILEVESSDTIANVKEKIQVKEGIKPDQQMLI---FFGQQLEDGVTLGDYDI 612



 Score = 32.3 bits (70), Expect = 0.29
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +1

Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
           E+   D++  +K  +++  G++P +  L  + F GK   D CTLAD +++
Sbjct: 334 EVESWDTIENVKAMVQDKEGIQP-QPNLQRLIFLGKELKDGCTLADYSIQ 382


>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
           profile: PF00240 ubiquitin family
          Length = 158

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +1

Query: 133 ELSPSDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
           E+   D++  +K  I++  G+  D+Q+L+   F+GK   D  TLAD N++
Sbjct: 101 EVENCDTIENIKAKIQDKQGIPVDQQRLI---FKGKQLEDGLTLADYNIQ 147


>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
           polyubiquitin (ubq9) gene sequence GI:304120 from
           [Arabidopsis thaliana]
          Length = 322

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 16/46 (34%), Positives = 29/46 (63%)
 Frame = +1

Query: 145 SDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCTLADLNLK 282
           SD++  +K  I++  G+  D+Q+L+   F GK+  D  TLAD +++
Sbjct: 22  SDTINNVKAKIQDIEGIPLDQQRLI---FSGKLLDDGRTLADYSIQ 64


>At3g42770.1 68416.m04468 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 532

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 163 LKIAIENATGVRPDRQKLLNVKFEGKVATDNCTL-ADLNLKPNLKIMMMGSLEEA-IVGA 336
           +K+ +    G  P  + L+N+KF GK       L   L + PNL  +++  L++   VG 
Sbjct: 292 VKVILLCCKGEIPMFENLINLKFSGKTRQWKFLLPLLLEICPNLTTLVLSGLDQNWFVGF 351

Query: 337 RTKP 348
           RT P
Sbjct: 352 RTPP 355


>At5g60520.1 68418.m07589 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 338

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 55  SQKMCDINDNPIKLSVRWNGKEFEIP 132
           ++K+   +D+   L VRWNG+E E+P
Sbjct: 178 AKKVASWDDSVDSLVVRWNGEEVEVP 203


>At3g06030.1 68416.m00688 NPK1-related protein kinase, putative
           (ANP3) similar to protein kinase [Nicotiana tabacum]
           gi|456309|dbj|BAA05648; identical to cDNA NPK1-related
           protein kinase 3 GI:2342426
          Length = 651

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 25/81 (30%), Positives = 37/81 (45%)
 Frame = +1

Query: 40  LDKSYSQKMCDINDNPIKLSVRWNGKEFEIPELSPSDSVAMLKIAIENATGVRPDRQKLL 219
           L+KS++  MCD  DN       W+ K  E P++  S S  +   A +  TGV  D +  L
Sbjct: 434 LNKSFNP-MCDSTDN-------WSCKFDESPKVMKSKSNLLSYQASQLQTGVPCDEETSL 485

Query: 220 NVKFEGKVATDNCTLADLNLK 282
                  VA D+    +L +K
Sbjct: 486 TFAGGSSVAEDDYKGTELKIK 506


>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
            domains PF04433: SWIRM domain, PF00249: Myb-like
            DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 986

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -1

Query: 652  LRSISSRLLTKSQCHNPRMPMSETHGETVALVRIRFQLQICDQRAYNQYLALVVS 488
            +R +S  L+ K Q H     +S  +      +R+R QL+   QR Y++   ++ +
Sbjct: 857  IRQLSGSLIEKQQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQIIAA 911


>At5g55540.1 68418.m06919 expressed protein
          Length = 1380

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 616 QCHNPRMPMSETHGETVALVRIRFQLQI-CDQRAYNQYLALV 494
           QC  P + +  TH E + L    FQ  + C QR  +++ ALV
Sbjct: 630 QCMKPNVTIVLTHSEKINLQSESFQATVGCIQRLRDKFQALV 671


>At3g53590.1 68416.m05919 leucine-rich repeat transmembrane protein
           kinase, putative CLV1 receptor kinase, Arabidopsis
           thaliana, EMBL:ATU96879
          Length = 783

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +1

Query: 88  IKLSVRWNGKEFEIPELSPSDSVAMLKIAIENATGVRPD 204
           +KLS+R  G +  IP+LS  ++++ L ++  + TG  P+
Sbjct: 141 VKLSLRNCGLQGSIPDLSRIENLSYLDLSWNHLTGTIPE 179


>At1g64470.1 68414.m07309 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 213

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 145 SDSVAMLKIAIENATGVRPDRQKLLNVKFEGKVATDNCT 261
           SDS+A +K+ I+   G R  RQKL+   F G+    N +
Sbjct: 53  SDSIAEVKLRIQTCNGFRVRRQKLV---FSGRELARNAS 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,893,249
Number of Sequences: 28952
Number of extensions: 248514
Number of successful extensions: 627
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)