Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11b11
(514 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037) 31 0.56
SB_1633| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_18531| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_34767| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 28 3.9
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0) 28 5.2
SB_13513| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_11672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_908| Best HMM Match : DUF1682 (HMM E-Value=3.1e-38) 27 6.9
SB_27878| Best HMM Match : zf-CCHC (HMM E-Value=0.00046) 27 9.1
>SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)
Length = 1235
Score = 31.1 bits (67), Expect = 0.56
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Frame = +2
Query: 65 IVMPLDYSNPYIIKFLSE-NFEKETKS-RVAWFIRNHEEISKRLKFSANYKGYHLEDVIR 238
IV PL + +IK+ E E E + R W IR HE ++R+KF A + LE +
Sbjct: 151 IVSPLVWVGQDLIKYYEELTVEMERREQRAQWQIRRHELDTERIKFFAEERA-KLE-ALH 208
Query: 239 KPIEMLLRTLSRQHLENNVNRRKVAPQQDPIKFTYKVHRPK 361
E T+S Q E+ V+ + Q D + + PK
Sbjct: 209 YLHENAKDTVSLQTTEDTVSS---SEQPDQSSLSASIATPK 246
>SB_1633| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 29.9 bits (64), Expect = 1.3
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 4/136 (2%)
Frame = +2
Query: 116 ENFEKETKSRVAWFIRN-HEEISKRLKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENN 292
+NF KE+ ++ A+ N H SK SA E ++ KP+ L TL + L++
Sbjct: 12 QNFWKESINKEAYVRLNWHARYSKEFSRSAYVPKPRKEGMVIKPVASL--TLPSKKLDST 69
Query: 293 -VNRRKVAPQQDPIKFTYKVHRPKNDTQFCRFITETINSLKNDEIMKPVEAEVQKMLYGD 469
V++ K+ QD I QF E NSL + M+PV + +K+LY
Sbjct: 70 TVSKTKL---QDSI------------AQFEAAAKEDPNSLLIE--MRPVSSNTKKLLYNG 112
Query: 470 LP--NGGRSQYLIAKK 511
GR QYL +K
Sbjct: 113 FSALGEGRYQYLEKRK 128
>SB_18531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/62 (22%), Positives = 23/62 (37%)
Frame = +2
Query: 146 VAWFIRNHEEISKRLKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRKVAPQQD 325
++W +R + E KR+ + K + PIEM R H V +
Sbjct: 32 ISWRVRKYMENRKRIHSTEGIKADDADHCYENPIEMTPRAADSDHTYEEVGQSSTYESLK 91
Query: 326 PI 331
P+
Sbjct: 92 PV 93
>SB_34767| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 224 EDV-IRKPIEMLLRTLSRQHLENNVNRRKVAPQQDPIK 334
ED+ ++KP+E L++ L E +V + V Q+DP++
Sbjct: 169 EDINVKKPMEYLVKHLMEDGKEGSVPYKPVMDQKDPLE 206
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +2
Query: 260 RTLSRQHLENNVNRRKVAPQQDPIKFTYKVHRPKNDTQFCRFITETINSLKNDE 421
RT +R HLE+ + +D IK PK +FC +I++L ++
Sbjct: 483 RTQNRDHLESGSSIHAPTCNKDRIKAVSSATAPKTSERFCSKSGSSIHALPRNK 536
>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
Length = 1014
Score = 27.9 bits (59), Expect = 5.2
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 5/120 (4%)
Frame = +2
Query: 119 NFEKETKSRVAWFIRNHEEISK-RLKFSANYKGYHLE----DVIRKPIEMLLRTLSRQHL 283
N E K F + E+ K R + A KGY + D I K + + + +
Sbjct: 252 NAETGAKQAQLKFKHSQAELKKKRAELKATEKGYEKDKQAFDAIEKSKAKIEGEMKKLNY 311
Query: 284 ENNVNRRKVAPQQDPIKFTYKVHRPKNDTQFCRFITETINSLKNDEIMKPVEAEVQKMLY 463
E+ + V+ + ++F YK PK D + + + + +K+ +E LY
Sbjct: 312 EDGKEEKLVSRKFPNLQFEYKDPEPKFDRRKVKGLVAQLIKVKDVTTATSLEVTAGGKLY 371
>SB_13513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/62 (22%), Positives = 23/62 (37%)
Frame = +2
Query: 146 VAWFIRNHEEISKRLKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRKVAPQQD 325
++W +R + E KR+ + K + PIEM R H V +
Sbjct: 32 ISWRVRKYMENRKRIHSTEGIKADDADHCYDNPIEMTPRAADSDHTYEEVGQSSTYESLK 91
Query: 326 PI 331
P+
Sbjct: 92 PV 93
>SB_11672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/62 (22%), Positives = 23/62 (37%)
Frame = +2
Query: 146 VAWFIRNHEEISKRLKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRKVAPQQD 325
++W +R + E KR+ + K + PIEM R H V +
Sbjct: 32 ISWRVRKYMENRKRIHSTEGIKADDADHCYDNPIEMTPRAADSDHTYEEVGQSSTYESLK 91
Query: 326 PI 331
P+
Sbjct: 92 PV 93
>SB_908| Best HMM Match : DUF1682 (HMM E-Value=3.1e-38)
Length = 326
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 125 EKETKSRVAWFIRNHEEISKRLKFSANYKGYHLED 229
+KE + V I NHE++ + L FS Y G ED
Sbjct: 132 QKELQDLVTKAISNHEDMFESLLFSDQYVGPKQED 166
>SB_27878| Best HMM Match : zf-CCHC (HMM E-Value=0.00046)
Length = 338
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/62 (20%), Positives = 23/62 (37%)
Frame = +2
Query: 146 VAWFIRNHEEISKRLKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRKVAPQQD 325
++W +R + + KR+ + K + PIEM R H V +
Sbjct: 270 ISWRVRKYMQNKKRIHSTEGIKADDADHCYDNPIEMTPRAADSDHTYEEVGQSSTYESLK 329
Query: 326 PI 331
P+
Sbjct: 330 PV 331
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,379,606
Number of Sequences: 59808
Number of extensions: 240019
Number of successful extensions: 572
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -