Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b11
         (514 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27690.1 68417.m03981 vacuolar protein sorting-associated pro...    29   1.8  
At5g53530.1 68418.m06652 vacuolar protein sorting-associated pro...    28   3.2  
At1g67520.1 68414.m07692 lectin protein kinase family protein co...    28   3.2  
At5g42710.1 68418.m05202 hypothetical protein                          28   4.2  
At5g55660.1 68418.m06940 expressed protein similar to unknown pr...    27   7.4  
At4g11940.1 68417.m01897 hypothetical protein predicted proteins...    27   7.4  
At3g21430.1 68416.m02704 expressed protein                             27   7.4  
At5g01970.1 68418.m00116 expressed protein                             27   9.8  
At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family prote...    27   9.8  
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila...    27   9.8  
At1g53660.1 68414.m06106 phosphate translocator-related low simi...    27   9.8  

>At4g27690.1 68417.m03981 vacuolar protein sorting-associated
           protein 26, putative / VPS26, putative similar to
           vacuolar sorting protein 26 [Homo sapiens] GI:9622852;
           contains Pfam profile PF03643: Vacuolar protein
           sorting-associated protein 26
          Length = 303

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 188 LKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRK 307
           ++F  N   YHL+DVI   I  LL  +  ++++  + RR+
Sbjct: 176 IEFEYNKSKYHLKDVILGKIYFLLVRIKMKNMDLEIRRRE 215


>At5g53530.1 68418.m06652 vacuolar protein sorting-associated
           protein 26, putative / VPS26, putative similar to
           vacuolar sorting protein 26 [Homo sapiens] GI:9622852;
           contains Pfam profile PF03643: Vacuolar protein
           sorting-associated protein 26
          Length = 302

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 188 LKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRK 307
           ++F  N   YHL+DVI   I  LL  +  ++++  + RR+
Sbjct: 176 IEFEYNKSKYHLKDVILGKIYFLLVRIKIKNMDLEIRRRE 215


>At1g67520.1 68414.m07692 lectin protein kinase family protein
           contains Pfam domains PF00069: Protein kinase domain and
           PF01453: Lectin (probable mannose binding)
          Length = 587

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = -2

Query: 480 PFGKSPYNI-FCTSASTGFIISSFFKLLIVSVINLQN--CVSF 361
           P+G + + +   +SAS GF++S  F  +  S I LQN  C+++
Sbjct: 301 PYGFTSFRVTVSSSASNGFVLSGTFSSVDCSAICLQNSSCLAY 343


>At5g42710.1 68418.m05202 hypothetical protein 
          Length = 807

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = +2

Query: 128 KETKSRVAWFIRNHEEISKRLKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRK 307
           K  K+R+     N ++  +    + NY+   ++ V +  IEM L  L+ Q  +NN +R++
Sbjct: 213 KRRKNRIKLLEENGDDDEEEDAHNQNYQ--KIKQVAKADIEMRLLALNYQEDKNNKHRKQ 270

Query: 308 VAPQQD 325
            +  +D
Sbjct: 271 TSYCED 276


>At5g55660.1 68418.m06940 expressed protein similar to unknown
           protein (pir||T08929)
          Length = 778

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 236 RKPIEMLLRTLSRQHL-ENNVNRRKVAPQQDPIKFTYKVHRPKNDTQF 376
           RK +E L+  + +    E +V + K  P +D     YKV R K+D  F
Sbjct: 336 RKSVERLVAVVDKDSSREFHVEKGKGTPLKDIPNVAYKVSRKKSDEVF 383


>At4g11940.1 68417.m01897 hypothetical protein predicted proteins
           Arabidopsis thaliana
          Length = 264

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
 Frame = +2

Query: 305 KVAPQQDPIKFTYKVHRPKNDTQFCRFITE---TINSLKNDEIMKPVE-AEVQKMLYGDL 472
           ++AP+  PI++ Y++ + + D +  R+IT+    ++  ++DE  K +   ++       L
Sbjct: 11  RIAPEDKPIQWCYQILKSR-DFKSARYITQMNLKLSKTRHDEYEKGLAICDILIAAENRL 69

Query: 473 PNG 481
           PNG
Sbjct: 70  PNG 72


>At3g21430.1 68416.m02704 expressed protein 
          Length = 961

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 329 IKFTYKVHRPKNDTQFCRFITETINSLKNDEIMKPVEA 442
           +KFTYKV R KN+   C    + +++L +  +M P  A
Sbjct: 186 LKFTYKVSRRKNEDTAC----DALHTLADLSLMMPETA 219


>At5g01970.1 68418.m00116 expressed protein
          Length = 351

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 170 EEISKRLKFSANYKGYHL--EDVIRKPIEMLLRTLSRQHLENNVNRRK 307
           EE +K L+ S   KG +   ED+IR  +E LL   +R   EN+V  R+
Sbjct: 228 EEENKHLRESHREKGSNPADEDLIRLQLESLLAEKARLAHENSVYARE 275


>At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family protein
           contains Pfam profile: PF04615 Utp14 protein
          Length = 858

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
 Frame = +2

Query: 149 AWFIRNHEEISKRLKFS-ANYKGYHLEDVI------RKPIEMLLRTL-----SRQHLENN 292
           +W +R HE+ +K+ K      K Y L +VI      +K  ++   TL     S++  E++
Sbjct: 720 SWMVREHEDANKKRKLDLKTRKDYRLRNVIISEKVDKKADKLHTTTLPFPYTSKEVFEHS 779

Query: 293 VNRRKVAPQQDPIKFTYKVHRPK 361
           + R  + P+ +P      ++RP+
Sbjct: 780 M-RMPIGPEFNPATIVGALNRPE 801


>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
           to RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 760

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 341 YKVHRPKNDTQFCRFITETINSLKNDEIMKPVEAEVQKM 457
           + VHRP    + C F ++ ++++K     KP   + Q +
Sbjct: 221 FDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQAL 259


>At1g53660.1 68414.m06106 phosphate translocator-related low
           similarity to SP|P52178 Triose phosphate/phosphate
           translocator, non-green plastid, chloroplast precursor
           (CTPT) {Brassica oleracea},
           phosphoenolpyruvate/phosphate translocator precursor
           [Mesembryanthemum crystallinum] GI:9295275; contains 8
           predicted transmembrane domains
          Length = 316

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 465 PYNIFCTSASTGFIISSFFKLLIVSVINLQNCVSFFGL*TLYVNFIG 325
           P  +F      G  I S   LLI+SVI+    VS +G   L +N++G
Sbjct: 107 PVAVFILGVCVGLEIMSCKMLLIMSVISFGVLVSSYG--ELNINWVG 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,671,678
Number of Sequences: 28952
Number of extensions: 179765
Number of successful extensions: 467
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)