Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11b10
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)               30   2.2  
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)               30   2.2  
SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)                 30   2.2  
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   28   6.7  
SB_22380| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)               28   6.7  
SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   6.7  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    28   6.7  
SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)        28   8.9  
SB_45877| Best HMM Match : Borrelia_orfA (HMM E-Value=0.23)            28   8.9  
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)             28   8.9  
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)                 28   8.9  

>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
          Length = 267

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -1

Query: 418 GCTWRD-TADTRRTLSTSAEQ-EDLRRVVQSKYSVRPRRDTLRRHTSRTP-FRPGCAAPR 248
           G  WR  T + ++     A+   +L  +    Y  RPRR   +R  SRT  +   C +P 
Sbjct: 42  GTEWRKLTVEEKQKFFAEAKLLNELHMIEHPDYKYRPRRRVKKRSLSRTTGYSCYCHSPG 101

Query: 247 SLTPEAASRDQQT 209
               E A +D+++
Sbjct: 102 EEEKETARQDRES 114


>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
          Length = 494

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -1

Query: 418 GCTWRD-TADTRRTLSTSAEQ-EDLRRVVQSKYSVRPRRDTLRRHTSRTP-FRPGCAAPR 248
           G  WR  T + ++     A+   +L  +    Y  RPRR   +R  SRT  +   C +P 
Sbjct: 42  GTEWRKLTVEEKQKFFAEAKLLNELHMIEHPDYKYRPRRRVKKRSLSRTTGYSCYCHSPG 101

Query: 247 SLTPEAASRDQQT 209
               E A +D+++
Sbjct: 102 EEEKETARQDRES 114


>SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)
          Length = 1382

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = -1

Query: 409 WRDTADTRRTLSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAAPRSLTPEA 230
           WRD A T R    + ++ED   V   K S+RP    LR   S      G +   +     
Sbjct: 677 WRDIALTMRDREYAQDEEDQIDVFDVKKSLRPVLKALRSR-SLLQISEGTSEEPTEAKSM 735

Query: 229 ASRDQQTNICS 197
           A +D++T+  S
Sbjct: 736 ADKDKETSASS 746


>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 439 LGSAARSGCTW--RDTADTRRTLSTSAEQEDLRRVVQSKYSVRPRR 308
           +G+  RS  T   +D A TR+TLS     +   R+VQ K S R ++
Sbjct: 267 IGAPYRSAATKLAKDAAVTRKTLSLQGNTQRQERLVQEKTSPRQQK 312


>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 204 FVVF*FIN*FLSLCYIKYSIILFANFYIFMIFASVV 97
           FVVF F+  F+ + +  + I +F  F++F++FA  V
Sbjct: 696 FVVFAFVV-FIFIFFFAFVIFVFNAFFVFVVFAFFV 730


>SB_22380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -1

Query: 463 QAFVLLSRLGSAARSGCTWRDTADTRRTLSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTS 284
           Q  V   R  +  R   T R    TRR ++T  +    R+V+  ++   PR+ T +RH +
Sbjct: 417 QRHVTTQRHVTTQRQVTTQRHVT-TRRQVTTQRQVTTQRQVITQRHVTTPRKVTTQRHVT 475


>SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)
          Length = 310

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +1

Query: 100 NRCENHENIEICE-QDNRVFDVTQAQELINKLEDYKCSSV---DLEKQLLELETEVRHIQ 267
           NRC+   ++ IC+ Q  +       Q  +N+L  + C +     +EKQ  + +TE+R ++
Sbjct: 123 NRCDLDTHLIICDFQTAKCTRGCGLQVNMNELAQHNCINELRGSMEKQKSDFQTELRDMK 182

Query: 268 VEME 279
            +ME
Sbjct: 183 RDME 186


>SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 757

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 416 LHVAGHGGHTPHALDIGGTGGPPAGCSK 333
           LH+  H G TPH  DI G G    G  K
Sbjct: 655 LHMKRHAGDTPHKCDICGKGFVNKGALK 682


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
 Frame = +1

Query: 88   VVQDNRCENHENIEICEQDNRVFDVTQAQELIN----KLEDYKCSSVDLEKQLLELETEV 255
            V +DNR E   N E+ E++ R+ ++ +  ++      ++  Y+   V++EK+  ELET+ 
Sbjct: 3429 VEEDNRVEPLIN-ELTEKEQRIQEIERELKVYETKHTEIRVYEEKYVEIEKRYYELETKY 3487

Query: 256  RHIQVEME 279
              +  EM+
Sbjct: 3488 YTVIQEMK 3495


>SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)
          Length = 1211

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = +1

Query: 118 ENIEICEQDNRVFDVTQAQELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMESVK 288
           E+ E+  ++N+ F +   +    KLE+YK  S  +EK  + L+ +++ +  E+  +K
Sbjct: 327 EDKELLAEENKCFGLETLKLRKEKLEEYKLFS-KIEKNNVRLKEDLKMVCHELNKLK 382


>SB_45877| Best HMM Match : Borrelia_orfA (HMM E-Value=0.23)
          Length = 734

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 574 QHRETQNKLRELEMKFEGLATHTNMLMGSKEQAFEQEVN 690
           +H+E   K+ E++ K  GLA+  ++    K  A E  +N
Sbjct: 245 EHQEAMGKIEEIQRKLSGLASKEDLREYVKWPALENALN 283


>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
          Length = 492

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 145 YPVRKFLYFHDFRICCPGLQRRRHPYFVHFFYNYFKI 35
           YPV   ++   F +C PG+ R  +P F   F   F +
Sbjct: 203 YPVFFAMFTRCFSLCFPGVYRYDYPVFFAIFTRCFSL 239


>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 1997

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 175  ELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMES 282
            EL  KLED       L K++ ELE  V  ++ E+E+
Sbjct: 1080 ELSGKLEDSNNLVESLRKRIRELEARVEELEEELEA 1115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,014,410
Number of Sequences: 59808
Number of extensions: 330021
Number of successful extensions: 1040
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)