Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11a21
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   6e-13
SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30)                   68   7e-12
SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   3e-10
SB_19245| Best HMM Match : ADK (HMM E-Value=0)                         45   4e-05
SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_37086| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_43601| Best HMM Match : ADK (HMM E-Value=2.3e-05)                   30   1.8  
SB_58373| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   29   3.1  
SB_380| Best HMM Match : AAA (HMM E-Value=0.14)                        29   3.1  
SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)                29   4.1  
SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)                    28   7.2  
SB_17550| Best HMM Match : WW (HMM E-Value=0.0012)                     28   7.2  

>SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 43/147 (29%), Positives = 83/147 (56%), Gaps = 3/147 (2%)
 Frame = +1

Query: 181 FSKDIEVVEDLYDMS--PVRRLPVIFVNGVPGAGNQTVAETISDITGYNMIRPGELERVE 354
           F K   V+E+L + S   +    ++F+ G PG+G   +A+ +++ +G   +  G+L + E
Sbjct: 113 FKKVSRVLEELPNRSNATLHDFDIMFIVGGPGSGKAELAKRLAESSGRTHLSMGQLLKEE 172

Query: 355 ATRDTVRGRMVAEKIRTLEDLPEQLTVDLIKEEMLS-QPEAKGFILVGFPRNSRMSDIFS 531
           AT+DT RGR VA+ I     +  +  ++++ E+++S +   +G+++ GFPR+   +  F+
Sbjct: 173 ATKDTDRGREVAQAIAMGTLVSPEHALNILTEKIVSDEKNLEGYVVDGFPRSHEQAKNFT 232

Query: 532 RQVKWPEKVVALEVDNEVAAARLQNKL 612
            +V    +VVALE  +E      + KL
Sbjct: 233 EKVSDFNRVVALECSDEEMERLAKEKL 259



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/46 (36%), Positives = 30/46 (65%)
 Frame = +1

Query: 244 VIFVNGVPGAGNQTVAETISDITGYNMIRPGELERVEATRDTVRGR 381
           ++F+ G PG+G   +A+ +++ +G   I  G+L + EAT+DT R R
Sbjct: 340 IVFIVGGPGSGKTELAKLLAESSGRTHISMGQLLKEEATKDTDRAR 385



 Score = 36.3 bits (80), Expect = 0.021
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +1

Query: 427 LTVDLIKEEMLSQPEAKGFILVGFPRNSRMSDIFSRQVKWPEKVVALEVDNEVAAARLQN 606
           + ++L++  M+ QP   GF++ GFPR       F +++   E ++  E   +   ARL  
Sbjct: 2   IILELLRLAMVKQPNTTGFLIDGFPRELEQGLEFEKELALCELLLYFECSPDTMKARLLK 61

Query: 607 KLSELGR 627
           +    GR
Sbjct: 62  RGETSGR 68


>SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30)
          Length = 297

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 30/98 (30%), Positives = 56/98 (57%)
 Frame = +1

Query: 244 VIFVNGVPGAGNQTVAETISDITGYNMIRPGELERVEATRDTVRGRMVAEKIRTLEDLPE 423
           ++++ G PGAG  T+ +++     Y  +  G+L R E TR   RG+M+ E +R  + +P+
Sbjct: 118 IVYILGGPGAGKGTICDSVVKKYNYCHLSAGDLLREEVTRGNERGQMITEMMREGKLVPK 177

Query: 424 QLTVDLIKEEMLSQPEAKGFILVGFPRNSRMSDIFSRQ 537
           ++T+ L+++ M    +  GF++ GFPR+      F  Q
Sbjct: 178 EITIGLLQDAMREHKDMPGFLIDGFPRDIDQGITFEEQ 215



 Score = 36.3 bits (80), Expect = 0.021
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 247 IFVNGVPGAGNQTVAETISDITGYNMIRPGELERVEATRDTVRGRMVAEKIRTLEDLP 420
           I+  G P  G +T  + +++   Y  I PG L   EA +DT R + + + I    D+P
Sbjct: 239 IWSKGGPATGKKTHCKHVAERFNYTHIMPGTLVAQEAQKDTDRAKQLIQTISAGNDVP 296


>SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
 Frame = +1

Query: 244 VIFVNGVPGAGNQTVAETISDITGYNMIRPGELERVEATRDTVRGRMVAEKIRTLEDLPE 423
           VIFV G PG+G   +A+ +++ +G   I  G+L + EAT+DT R R VA  I     +  
Sbjct: 106 VIFVIGGPGSGKTELAKLLAESSGRTHISMGQLLKEEATKDTDRAREVARAIGMGTLVSP 165

Query: 424 QLTVDLIKEEML-SQPEAKGFILVGFPRNSRMSDIFSRQVKWPEKVVALEVDNEVAAARL 600
           +  + ++ E ++  +    G+++ G+PR+   +  F+ +V    +VVALE  +E      
Sbjct: 166 EHALGILSETIVRGEKNLGGYVVDGYPRSHEQAKNFTEKVSDFNRVVALECSDEEMERLA 225

Query: 601 QNKL 612
           + KL
Sbjct: 226 KEKL 229


>SB_19245| Best HMM Match : ADK (HMM E-Value=0)
          Length = 188

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 35/119 (29%), Positives = 55/119 (46%)
 Frame = +1

Query: 253 VNGVPGAGNQTVAETISDITGYNMIRPGELERVEATRDTVRGRMVAEKIRTLEDLPEQLT 432
           + G PG+G  TV+E I    G   +  GEL R      T  G      I   E +P++L 
Sbjct: 36  IMGPPGSGKGTVSERIVRDFGVEHLSSGELLRHHVQNHTDLGEEAQAYILKGELVPDELM 95

Query: 433 VDLIKEEMLSQPEAKGFILVGFPRNSRMSDIFSRQVKWPEKVVALEVDNEVAAARLQNK 609
           VDLI  E+    +   ++L GFPR    ++  S + K  + VV ++V       R++ +
Sbjct: 96  VDLILHEL--DAKKGNWLLDGFPRTVGQAETLSEKHK-IDVVVNMDVPFATIVDRIKQR 151


>SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/84 (22%), Positives = 39/84 (46%)
 Frame = +1

Query: 379 RMVAEKIRTLEDLPEQLTVDLIKEEMLSQPEAKGFILVGFPRNSRMSDIFSRQVKWPEKV 558
           R++A   + L +L  +   DL +EE+ SQ +  GF+++  P      ++  +  +    V
Sbjct: 284 RVLALGYKKLGELGNKEMRDLGREEVESQLQFVGFVVIACPLKMDSKNVIKQIQESSHHV 343

Query: 559 VALEVDNEVAAARLQNKLSELGRP 630
             +  DN + A  +  +L    +P
Sbjct: 344 TMITGDNPLTACHVAKELRLTKKP 367


>SB_37086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
 Frame = +1

Query: 202 VEDLYDMSPVRR-LPVIFVN--GVPGAGNQTVAETISDITGYNM---IRPGELERVEATR 363
           V  + D+S  +R  P++  N   +  A  +++A+T +  T  +    + P E  R++  +
Sbjct: 420 VNTVCDVSTSKRDTPMLSQNTASLTTATTKSLAQTSASETASSSSSGVSPHEA-RIQRLK 478

Query: 364 DTVRGRMVA-EKIRT-----LEDLPEQLTVDLIKEEMLSQP-EAKGFILVGFPRNSRMSD 522
           D V+ +  A EKIR      LED+ E++T     E  LS+P   KG  LV  P      D
Sbjct: 479 DLVKKQEAAIEKIREKRRKELEDVHEKVTAVYASEGALSEPTRTKGQFLVPLPPKKARLD 538

Query: 523 I 525
           +
Sbjct: 539 L 539


>SB_43601| Best HMM Match : ADK (HMM E-Value=2.3e-05)
          Length = 712

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = +1

Query: 367 TVRGRMVAEKIRTLEDLPEQLTVDLIKEEMLSQPEA--KGFILVGFPRNSRMSDIFSRQV 540
           +V+  ++A K   + ++P+ L + L+ + M S+ +A  KG++L GFP+    ++   +  
Sbjct: 310 SVQAELLASKYGLI-NVPDDLVLQLLHQRM-SRLDAVTKGWVLHGFPKTREQAEALGKAG 367

Query: 541 KWPEKVVALEVDNEVAAARLQ 603
             P +   L  D  V   RLQ
Sbjct: 368 YEPNRRRVLSTD--VLGLRLQ 386


>SB_58373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 232 RRLPVIFVNGVPGAGNQTVAETISDITGYNMIRPGELER 348
           R  P I + G PG G  T    +++  G+  I  G+L +
Sbjct: 6   RSRPNILITGTPGTGKSTTGVELANRLGFKYINVGQLAK 44


>SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +1

Query: 244 VIFVNGVPGAGNQTVAETISDITGYNMI--RPGELERVEATRDTVRGRMVAEKIRTLEDL 417
           V  + G PG G  T+A  I+   GYN++     +   VE  R  +      + +    + 
Sbjct: 382 VALLCGPPGLGKTTLAHVIAQHAGYNVVEMNASDDRAVEVFRQKIEVATQMKSVLGANER 441

Query: 418 PEQLTVDLI 444
           P  L +D I
Sbjct: 442 PNCLVIDEI 450


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 64  QLNTYLYYAILPMYLNDFMKVLFI*VFAELKTYYKMGCFFSKDIE--VVEDLYDMSPVRR 237
           Q NT++ Y IL + L  F+ V  + +  ++ T +  GC F   +   +V D ++  PV  
Sbjct: 227 QDNTWVGYLILFLVLGTFVVVGVLILNVDISTGHYTGCLFFYQVVSLLVRDGFEADPVLT 286

Query: 238 LPVIFVNGVPGAG 276
           + +   N   G G
Sbjct: 287 VLMGLANAQVGFG 299


>SB_380| Best HMM Match : AAA (HMM E-Value=0.14)
          Length = 508

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 409 EDLPEQLTVDLIKEEMLSQPEAK-GFILVGFPRNSRMSDIFSRQVKWPEKVVALEVDNEV 585
           E LP +    ++       P  K GFIL GFP +   +   +    +P+  V L V++  
Sbjct: 240 EQLPNETLEKILTSWWHEDPFKKTGFILEGFPSSESEARFLASSGLFPDATVLLAVEDTH 299

Query: 586 AAARL 600
            A RL
Sbjct: 300 IADRL 304


>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
          Length = 890

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +3

Query: 306 HHRLQHDPAGRTGKSRGYK 362
           H RL+ DP+GRTG SRG K
Sbjct: 626 HQRLR-DPSGRTGSSRGRK 643


>SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +3

Query: 306 HHRLQHDPAGRTGKSRGYK 362
           H RL+ DP+GRTG SRG K
Sbjct: 102 HQRLR-DPSGRTGSSRGRK 119


>SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)
          Length = 1032

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +1

Query: 328 RPGELERVEATRDTVRGRMVAEKIRTLEDLPEQL 429
           R  ELE V +T D   G  VAE IR L+D  +QL
Sbjct: 801 REYELEVVGST-DITNGEEVAEHIRVLQDAVDQL 833


>SB_17550| Best HMM Match : WW (HMM E-Value=0.0012)
          Length = 677

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 352 EATRDTVRGRMVAEKIRTLEDLPEQLTVDLI 444
           EA    +RG+ +AE +  + DLPE+   D I
Sbjct: 421 EANHPRIRGQTLAESLEHVSDLPEESNDDRI 451


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,552,363
Number of Sequences: 59808
Number of extensions: 375488
Number of successful extensions: 922
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)