Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f07
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45870.1 68415.m05705 expressed protein contains Pfam profile...    31   0.61 
At1g72460.1 68414.m08379 leucine-rich repeat transmembrane prote...    29   2.5  
At1g36990.1 68414.m04611 expressed protein contains PS00070: Ald...    28   4.3  

>At2g45870.1 68415.m05705 expressed protein contains Pfam profile
           PF05249: Uncharacterised protein family (UPF0187)
          Length = 410

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 30/130 (23%), Positives = 48/130 (36%)
 Frame = +2

Query: 116 LTFSFLKNCTLKSFFNGKPRKYSRVTQTEPKIPQLKGDPNYIEISPTWDTDIKPELRAAV 295
           +  SF  N T  SF   KPR YS ++   PK    K +P+ +   P  D     E   ++
Sbjct: 5   MNLSFSSNFTNLSFL--KPRLYSGISARAPKSLHFKFNPSCVSSGPKSDDSPLSEKLISL 62

Query: 296 LQDMQVYPGFVTXXXXXXXXXXXXPYLKRMRYEFDHWDDAIQGFRETERSQFKPENQVIL 475
           L+ +  +   +                KR  Y  ++W       R        P ++VIL
Sbjct: 63  LKAVPNWSDGIKERRMQQ---------KRSLYTHENWVRHRSSLRHLRHVSSSPSSRVIL 113

Query: 476 DRVKALAFTT 505
             +  + F T
Sbjct: 114 SLIPPVFFFT 123


>At1g72460.1 68414.m08379 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat (5 copies), PF00069 eukaryotic protein
           kinase domain
          Length = 644

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = -2

Query: 597 ITSPQNRTASICGFMNPAAARSKTCTCGS----VSVVKANALTRSSMTWFSGLNWLRSVS 430
           + +P  ++ S+  F +P A R  T +  S      VV    LT    + ++GLN     +
Sbjct: 507 LINPDAQSQSLVAFKSPEADRDGTVSAKSDVFSFGVVVLEILTGKFPSQYAGLNRAGGAN 566

Query: 429 LKPWMASSQ*SNSYLILL 376
           L  W+ S+     ++ LL
Sbjct: 567 LVEWLGSALEQGGWMDLL 584


>At1g36990.1 68414.m04611 expressed protein contains PS00070:
           Aldehyde dehydrogenases cysteine active site; similar to
           high molecular mass nuclear antigen (GI:2754696) [Gallus
           gallus];similar to streptococcal hemagglutinin
           (GI:8885520) [Streptococcus gordonii] similar to
           proteophosphoglycan (GI:5420389) [Leishmania major]
          Length = 581

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 531 KTCTCGSVSVVKANALTRSSMTWFSGLNWLRSVSLKP 421
           K CT GS++  KANA++  ++T  SGLN   ++   P
Sbjct: 243 KACT-GSLTSPKANAVSAGTLTGPSGLNMAEALVQAP 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,121,759
Number of Sequences: 28952
Number of extensions: 259672
Number of successful extensions: 729
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)