Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12a17
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S... 29 0.46
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 27 1.9
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.7
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 26 5.7
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 26 5.7
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 25 7.5
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 25 7.5
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 25 9.9
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 25 9.9
>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 498
Score = 29.5 bits (63), Expect = 0.46
Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Frame = +3
Query: 228 TFSSAHRLHSPFLSDEENKKVYGKCNNPNGHG---HNYVVLVTVKGPVDPQTGMVMNITD 398
+F ++ R+ P +S++ +++YG N N + VT+ D +T
Sbjct: 42 SFMTSSRMDKPSMSNKPREQMYGLGNMTAVQEPIPENSLKTVTL----DQAQTAASTVTG 97
Query: 399 LKK-YIKTAILEPLDHKNLDNDVPYFKTM-ASTTENVAIYVWDQLQRIMEKPQLLHEVKI 572
L Y+ PLD++ LD+ +P+F + + Y W+ + + Q + +
Sbjct: 98 LHPIYMDFQATSPLDYRVLDSMLPFFTGIYGNPHSRTHAYGWEAEKAVENARQEI--ASV 155
Query: 573 LETEKNHVVYRGGNTYS 623
+ + +++ G T S
Sbjct: 156 INADPREIIFTSGATES 172
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 27.5 bits (58), Expect = 1.9
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Frame = +3
Query: 93 DIIS--IKKQNSI*CVKFLILTVFEFSIELLNYTMSSLPIVSIIRRETFSSAHRLHSPFL 266
DII+ + QNS K + S L + ++SLP + + + S A + L
Sbjct: 65 DIIAPQLPSQNSEIIEKNSPVNKLNSSTSLTTHQLASLPKLEVTDHDNVSEAETV---VL 121
Query: 267 SDEENKK--VYGKCNNPNGHGHNYVV--LVTVKGPVDPQTGMVMNITDLKKYIKTAILEP 434
+++E K+ + G + G + + + V V+PQ NIT + +K + E
Sbjct: 122 NEDEEKETSLVGSVSVTEDLGDSSAIGRTILVNNSVEPQMENTANITIVSPSLKESDFES 181
Query: 435 LDHKNLDND 461
+ DN+
Sbjct: 182 EEKATNDNN 190
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 444 KNLDNDVPYFKTMASTTENVAIYV-WDQLQRIMEKPQLLHEVK 569
+NLD + P F+ NV +++ +DQ IM +P LLH++K
Sbjct: 512 ENLDAEDPLFRA------NVHLHMTYDQAIIIMSRPVLLHKMK 548
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +3
Query: 174 LLNYTMSSLPIVSIIRRETFSSAHRLHSPFLSDEENKKVYGKCNNPNGHGHNY 332
L+NY + P S RRET + HS S +E Y + + +Y
Sbjct: 129 LMNYHSTVTPQTSERRRETRRHQNNQHSQQYSSQERSSSYNNFEDASSPQSSY 181
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 558 HEVKILETEKNHVVYRGGNTY 620
HE ++ +K H YRGG +Y
Sbjct: 305 HEAELRNNDKFHYRYRGGESY 325
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 369 QTGMVMNITDLKKYIKTAILEPLDHKNLDND 461
Q G + DL +I + +HK LDND
Sbjct: 89 QQGQIETKPDLTLFINELLTTKKEHKKLDND 119
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 7.5
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 516 WDQLQRIMEKPQLLHEVKILETEK--NHVVYRG--GNTYSRKKPDSSCHRSH 659
W +LQ MEKP + I EK + ++G G SR + DS H+ H
Sbjct: 669 WQELQLAMEKPNATLDTYIEAHEKYVTSITHKGLLGGGKSRNE-DSFLHQLH 719
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 381 VMNITDLKKYIKTAILEPLDHKNLDNDVPYFKTMASTTENVAIYVWDQLQRIME 542
V+ I+DL+K+ T + + DVP + T EN+ + + D + + E
Sbjct: 62 VLRISDLRKHGVTVHMNITSFRQPIADVPAIYFVQPTQENIELIIEDLSKGLYE 115
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 25.0 bits (52), Expect = 9.9
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 396 DLKKYIKTA----ILEPLDHKNLDNDVPYFKTMASTTENVAIYVWDQLQRIMEK 545
D YI+TA ++ L K DN+V A T + + +D +QRIM K
Sbjct: 90 DNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIMAK 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,910
Number of Sequences: 5004
Number of extensions: 57149
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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