Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12a17
(673 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 157 6e-39
SB_31649| Best HMM Match : No HMM Matches (HMM E-Value=.) 157 8e-39
SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11) 29 2.6
SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_56043| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_28695| Best HMM Match : Ras (HMM E-Value=0) 28 6.0
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026) 28 7.9
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 157 bits (382), Expect = 6e-39
Identities = 78/148 (52%), Positives = 107/148 (72%)
Frame = +3
Query: 165 SIELLNYTMSSLPIVSIIRRETFSSAHRLHSPFLSDEENKKVYGKCNNPNGHGHNYVVLV 344
++ L TMS P V I R ETFS++HRLH+P L++++N++++G+CNN NGHGHNY V V
Sbjct: 877 AVYLAAVTMSR-PFVYITRTETFSASHRLHNPTLTNQKNQELFGRCNNKNGHGHNYKVSV 935
Query: 345 TVKGPVDPQTGMVMNITDLKKYIKTAILEPLDHKNLDNDVPYFKTMASTTENVAIYVWDQ 524
TV VD TGMV+N+ LK I+ +L LDHKNLD DV YFKT+ ST ENVAIY++DQ
Sbjct: 936 TVASTVDGTTGMVINLVTLKGKIE-EVLGKLDHKNLDMDVAYFKTVVSTAENVAIYIYDQ 994
Query: 525 LQRIMEKPQLLHEVKILETEKNHVVYRG 608
L+ ++ L+EV ++E+E + VYRG
Sbjct: 995 LKPLLPDGS-LYEVGLIESETDAAVYRG 1021
>SB_31649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 157 bits (381), Expect = 8e-39
Identities = 79/150 (52%), Positives = 105/150 (70%)
Frame = +3
Query: 159 EFSIELLNYTMSSLPIVSIIRRETFSSAHRLHSPFLSDEENKKVYGKCNNPNGHGHNYVV 338
E S+E+ + S P V I R ETFS+ HRLHS L+D++N +++GKCNN NGHGHNY V
Sbjct: 53 ESSVEV-SELHSKRPFVYITRSETFSACHRLHSTKLTDQQNIELFGKCNNKNGHGHNYKV 111
Query: 339 LVTVKGPVDPQTGMVMNITDLKKYIKTAILEPLDHKNLDNDVPYFKTMASTTENVAIYVW 518
VTV VD TGMVMN+ LK I+ +L LDHKNLD DV YF+T+ ST EN+A+Y++
Sbjct: 112 EVTVASTVDEDTGMVMNLVALKGKIE-EVLSELDHKNLDLDVEYFQTVVSTAENIAVYIY 170
Query: 519 DQLQRIMEKPQLLHEVKILETEKNHVVYRG 608
+QL R + +L+EV++ ET+KN YRG
Sbjct: 171 NQLNRGL-PDGILYEVRVHETDKNVAFYRG 199
>SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -3
Query: 368 RIYRTLYCYKNNIIMTVTIRIV 303
RIYR+L+ YKN++ M ++I I+
Sbjct: 58 RIYRSLFTYKNSLTMIISIWII 79
>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 258 PFLSDEENKKVYGKCNNPNGHGHNYVVLVTVKGPVDPQTGMVMNITDL 401
P DEE K +G+ NP +G N + + P D + G++ DL
Sbjct: 471 PQSMDEEGPKHHGQTTNPKHNGGNKETTSSSQTPTDYKPGIIEVAVDL 518
>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
Length = 1171
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +3
Query: 519 DQLQRIMEKPQLLHEVKILETEKNHVVYRGGNTYSRKKPDSSCHRSHVSHE 671
+ L+ +++K L+ K++ + N ++ G Y + PD HR H +
Sbjct: 220 NNLEDVLDKEYNLYITKVIMSTVNSLLMVGNYEYRKLTPDGRNHREHADSD 270
>SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1198
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +3
Query: 279 NKKVYGKCNNPNGHGHNYVVLVTVKGPVDPQTGMVMNITDLKKYIKTAIL--EPLDHKNL 452
+KK + + GH+ + V V+ P+ G+V ++ + KK K +PL K+
Sbjct: 986 SKKESKESKRDSKKGHDQIDAVDVQLQDTPKNGLVSDVVETKKNSKKEKFKKKPLKSKSA 1045
Query: 453 DNDVPYFKTMASTTEN-VAIYVWDQ 524
+N V +T + ++ +VW+Q
Sbjct: 1046 ENLVEAQRTDLTIVQSPYTEWVWNQ 1070
>SB_56043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 510 YVWDQLQRIMEKPQLLHEVKILETEKNHVVYRGGNTYSRKKPDSSCHRSHV 662
+VW + +R ++ ++ V ++ + N+V RG +RKKP+ + HV
Sbjct: 98 HVWPKDRRDLKIRVVMAVVLLIGAKPNYVGLRGNLWITRKKPNYTLPHKHV 148
>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
Length = 1058
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 387 NITDLKKYIKTAILEPLDHKNLDN--DVPYFKTMASTTENV 503
N TDL + ++ +++ +D KNL N D Y +T A T N+
Sbjct: 1009 NKTDLAEDEESRVVKTIDGKNLANQYDALYMETSAKTGNNI 1049
>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
Length = 936
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 495 ENVAIYVWDQLQRIMEKPQLLHEVKILETEKNHVVYRGGNTYSRKKPDSSCHRSHV 662
++ +YV + + P L H T+ N + Y N+ KPDS CH + V
Sbjct: 883 QSPTLYVTQTQLFVTQSPTLCH------TKPNSLCYTKPNSLCHTKPDSLCHTNPV 932
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,882,799
Number of Sequences: 59808
Number of extensions: 402460
Number of successful extensions: 1009
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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