Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12a14
         (681 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O43065 Cluster: Probable helicase mot1; n=4; Schizosacc...    33   4.9  

>UniRef50_O43065 Cluster: Probable helicase mot1; n=4;
           Schizosaccharomyces pombe|Rep: Probable helicase mot1 -
           Schizosaccharomyces pombe (Fission yeast)
          Length = 1953

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = -1

Query: 480 LYRV*RYRLCPQSLSQ*YALSHLINSVSIMKWVL*LTLRVCFYNPSLKK 334
           L+ + RY L     S  YAL+  I+  +   W+  LTLR+CF N  L++
Sbjct: 618 LFHLMRYTLTGVRRSVVYALTKFISVQTSCSWITGLTLRLCFQNVLLEQ 666


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,309,368
Number of Sequences: 1657284
Number of extensions: 11012581
Number of successful extensions: 23982
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 22999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23966
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)